Design of protein membrane interaction inhibitors by virtual ligand screening, proof of concept with the C2 domain of factor V (Q35921636)

11 August 2017

Design of protein membrane interaction inhibitors by virtual ligand screening, proof of concept with the C2 domain of factor V (English)

1 reference

11 August 2017

0 references

2

Olivier Sperandio

1 reference

11 August 2017

Markus Sack

3

0 references

Maria A Miteva

object named as

Maria A Miteva

5

0 references

Bruno O Villoutreix

8

object named as

Bruno O Villoutreix

1 reference

11 August 2017

Kenneth Segers

1

1 reference

11 August 2017

Rainer Fischer

4

1 reference

11 August 2017

Jan Rosing

6

1 reference

11 August 2017

Gerry A F Nicolaes

7

1 reference

11 August 2017

language of work or name

English

0 references

publication date

23 July 2007

1 reference

11 August 2017

6

1 reference

Proceedings of the National Academy of Sciences of the United States of America

inferred from page(s)

published in

1 reference

11 August 2017

104

1 reference

11 August 2017

31

1 reference

11 August 2017

12697-12702

1 reference

Virtual screening: are we there yet?

11 August 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1937529

Methods for the prediction of protein-ligand binding sites for structure-based drug design and virtual ligand screening

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1937529

Receptor-based computational screening of compound databases: the main docking-scoring engines

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1937529

Prediction of protein-ligand interactions. Docking and scoring: successes and gaps

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1937529

Streamlining lead discovery by aligning in silico and high-throughput screening

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1937529

Between a rock and a hard place?

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1937529

Predicting protein druggability

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1937529

PCE: web tools to compute protein continuum electrostatics

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1937529

Regulation of blood coagulation by the protein C anticoagulant pathway: novel insights into structure-function relationships and molecular recognition

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1937529

Pocketome via comprehensive identification and classification of ligand binding envelopes.

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1937529

Virtual screening of chemical libraries

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1937529

Virtual screening in lead discovery and optimization.

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1937529

Surflex: fully automatic flexible molecular docking using a molecular similarity-based search engine

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1937529

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1937529

Identification and mapping of small-molecule binding sites in proteins: computational tools for structure-based drug design

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1937529

The crystal structure of the PX domain from p40(phox) bound to phosphatidylinositol 3-phosphate

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1937529

High-throughput docking for lead generation

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1937529

Protein C anticoagulant pathway and its role in controlling microvascular thrombosis and inflammation

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1937529

G-protein signaling through tubby proteins

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1937529

The productive conformation of arachidonic acid bound to prostaglandin synthase

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1937529

2 October 2017

The Protein Data Bank

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1937529

Structure of the C2 domain of human factor VIII at 1.5 A resolution

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1937529

Crystal structures of the membrane-binding C2 domain of human coagulation factor V

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1937529

Crystal structure of human β2-glycoprotein I: implications for phospholipid binding and the antiphospholipid syndrome

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1937529

A hot spot of binding energy in a hormone-receptor interface

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1937529

FAF-Drugs: free ADME/tox filtering of compound collections.

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1937529

Structural bioinformatics prediction of membrane-binding proteins

11 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1937529

Soluble phosphatidylserine binds to a single identified site in the C2 domain of human factor Va.

11 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1937529

Enhanced virtual screening by combined use of two docking methods: getting the most on a limited budget.

11 July 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.0701051104

Biosensor analysis of the interaction between drug compounds and liposomes of different properties; a two-dimensional characterization tool for estimation of membrane absorption

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.0701051104

Probing the mechanism of drug/lipid membrane interactions using Biacore

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.0701051104

Fast structure-based virtual ligand screening combining FRED, DOCK, and Surflex

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.0701051104

Q-SiteFinder: an energy-based method for the prediction of protein-ligand binding sites.

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.0701051104

Identification of functionally important amino acid residues within the C2-domain of human factor V using alanine-scanning mutagenesis

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.0701051104

Rational design of diflunisal analogues with reduced affinity for human serum albumin

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.0701051104

Disruption of protein-membrane binding and identification of small-molecule inhibitors of coagulation factor VIII.

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.0701051104

High-resolution and high-throughput protocols for measuring drug/human serum albumin interactions using BIACORE.

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.0701051104

LigandFit: a novel method for the shape-directed rapid docking of ligands to protein active sites

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.0701051104

Comparison of Shape-Matching and Docking as Virtual Screening Tools

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.0701051104

Identification of Ellagic Acid as Potent Inhibitor of Protein Kinase CK2: A Successful Example of a Virtual Screening Application

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.0701051104

Mutations in a potential phospholipid binding loop in the C2 domain of factor V affecting the assembly of the prothrombinase complex

21 January 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/17646652

12 December 2020

inferred from PubMed ID database lookup

Virtual screening: a real screening complement to high-throughput screening

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/17646652

12 December 2020

inferred from PubMed ID database lookup

Characterization of two forms of human factor Va with different cofactor activities

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/17646652

12 December 2020

inferred from PubMed ID database lookup

Identifiers

DOI

10.1073/PNAS.0701051104

1 reference

11 August 2017

0 references

1 reference

11 August 2017

1 reference