Wellington-bootstrap: differential DNase-seq footprinting identifies cell-type determining transcription factors (Q35853353)

10 August 2017

Wellington-bootstrap: differential DNase-seq footprinting identifies cell-type determining transcription factors (English)

1 reference

10 August 2017

5

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8 June 2020

Constanze Bonifer

6

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8 June 2020

author name string

Jason Piper

1

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8 June 2020

Salam A Assi

2

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8 June 2020

Pierre Cauchy

3

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8 June 2020

Christophe Ladroue

4

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8 June 2020

Sascha Ott

7

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8 June 2020

language of work or name

English

0 references

publication date

25 November 2015

1 reference

10 August 2017

1 reference

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8 June 2020

volume

16

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8 June 2020

page(s)

1000

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describes a project that uses

8 June 2020

limma

object named as

limma

2 references

22 June 2022

https://europepmc.org/article/PMC/4658755

based on heuristic

inferred from PubMed Central ID database lookup

CZ Software Mentions: A large dataset of software mentions in the biomedical literature

cites work

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DNase footprint signatures are dictated by factor dynamics and DNA sequence

11 July 2018

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11 July 2018

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Refined DNase-seq protocol and data analysis reveals intrinsic bias in transcription factor footprint identification

11 July 2018

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Wellington: a novel method for the accurate identification of digital genomic footprints from DNase-seq data

11 July 2018

1 reference

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11 July 2018

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11 July 2018

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11 July 2018

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Differential DNase I hypersensitivity reveals factor-dependent chromatin dynamics

11 July 2018

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11 July 2018

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Differential oestrogen receptor binding is associated with clinical outcome in breast cancer

11 July 2018

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Structure and function of active chromatin and DNase I hypersensitive sites.

11 July 2018

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Two distinct auto-regulatory loops operate at the PU.1 locus in B cells and myeloid cells

11 July 2018

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Accurate inference of transcription factor binding from DNA sequence and chromatin accessibility data

11 July 2018

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High-resolution genome-wide in vivo footprinting of diverse transcription factors in human cells

11 July 2018

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11 July 2018

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Simple combinations of lineage-determining transcription factors prime cis-regulatory elements required for macrophage and B cell identities

11 July 2018

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Transcript assembly and quantification by RNA-Seq reveals unannotated transcripts and isoform switching during cell differentiation

11 July 2018

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11 July 2018

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C/EBPalpha expression is partially regulated by C/EBPbeta in response to DNA damage and C/EBPalpha-deficient fibroblasts display an impaired G1 checkpoint

11 July 2018

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11 July 2018

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11 July 2018

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11 July 2018

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Linear models and empirical bayes methods for assessing differential expression in microarray experiments

11 July 2018

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11 July 2018

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Constitutive expression of PU.1 in fetal hematopoietic progenitors blocks T cell development at the pro-T cell stage

11 July 2018

1 reference

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A novel transcription factor, T-bet, directs Th1 lineage commitment

11 July 2018

1 reference

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Absence of granulocyte colony-stimulating factor signaling and neutrophil development in CCAAT enhancer binding protein alpha-deficient mice

11 July 2018

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11 July 2018

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11 July 2018

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24 September 2018

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10.1186/S12864-015-2081-4

24 September 2018

Identifiers

DOI

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8 June 2020

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https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:26608661%20AND%20SRC:MED&resulttype=core&format=json

8 June 2020

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