Evolutionary dynamics of Staphylococcus aureus during progression from carriage to disease (Q35849727)

10 August 2017

Evolutionary dynamics of Staphylococcus aureus during progression from carriage to disease (English)

1 reference

10 August 2017

Staphylococcus aureus

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inferred from title

Evolutionary dynamics

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Richard G Everitt

10

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Bernadette C Young

Bernadette C Young

1

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Elizabeth M Batty

Elizabeth M Batty

3

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Tanya Golubchik

Tanya Golubchik

2

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Zamin Iqbal

Zamin Iqbal

11

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Xavier Didelot

Xavier Didelot

15

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Peter Donnelly

17

Peter Donnelly

1 reference

10 August 2017

19

Derrick W Crook

1 reference

10 August 2017

18

Tim E Peto

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10 August 2017

20

Rory Bowden

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10 August 2017

16

Rosalind M Harding

1 reference

10 August 2017

Antonina A Votintseva

6

Antonina A Votintseva

1 reference

10 August 2017

9

Kyle Knox

1 reference

10 August 2017

Hanna Larner-Svensson

5

Hanna Larner-Svensson

1 reference

10 August 2017

8

Heather Godwin

1 reference

10 August 2017

4

Rowena Fung

1 reference

10 August 2017

Ruth R Miller

7

1 reference

10 August 2017

Andrew J Rimmer

12

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10 August 2017

Madeleine Cule

13

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10 August 2017

Camilla L C Ip

14

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10 August 2017

Daniel J Wilson

21

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10 August 2017

language of work or name

English

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publication date

5 March 2012

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Proceedings of the National Academy of Sciences of the United States of America

10 August 2017

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10 August 2017

109

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10 August 2017

4550-4555

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10 August 2017

12

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De novo assembly and genotyping of variants using colored de Bruijn graphs

10 August 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3311376

How does Staphylococcus aureus escape the bloodstream?

11 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3311376

Control of bacterial virulence by AraC-like regulators that respond to chemical signals

11 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3311376

Increased mortality with accessory gene regulator (agr) dysfunction in Staphylococcus aureus among bacteremic patients

11 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3311376

Stampy: a statistical algorithm for sensitive and fast mapping of Illumina sequence reads

11 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3311376

progressiveMauve: multiple genome alignment with gene gain, loss and rearrangement

11 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3311376

A timescale for evolution, population expansion, and spatial spread of an emerging clone of methicillin-resistant Staphylococcus aureus

11 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3311376

Evolution of MRSA during hospital transmission and intercontinental spread

11 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3311376

Population structure of a hybrid clonal group of methicillin-resistant Staphylococcus aureus, ST239-MRSA-III.

11 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3311376

Evolutionary analysis of the dynamics of viral infectious disease

11 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3311376

The Sequence Alignment/Map format and SAMtools

11 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3311376

Determinants of phase variation rate and the fitness implications of differing rates for bacterial pathogens and commensals.

11 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3311376

Velvet: algorithms for de novo short read assembly using de Bruijn graphs

11 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3311376

Epidemic community-associated methicillin-resistant Staphylococcus aureus: recent clonal expansion and diversification.

11 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3311376

Gene acquisition at the insertion site for SCCmec, the genomic island conferring methicillin resistance in Staphylococcus aureus

11 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3311376

BEAST: Bayesian evolutionary analysis by sampling trees

11 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3311376

Virulence determinants in community and hospital meticillin-resistant Staphylococcus aureus.

11 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3311376

Tracking the in vivo evolution of multidrug resistance in Staphylococcus aureus by whole-genome sequencing

11 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3311376

Synonymous substitution rates predict HIV disease progression as a result of underlying replication dynamics

11 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3311376

Temporal trends in gonococcal population genetics in a high prevalence urban community

11 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3311376

Estimating diversifying selection and functional constraint in the presence of recombination

11 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3311376

Microarrays reveal that each of the ten dominant lineages of Staphylococcus aureus has a unique combination of surface-associated and regulatory genes

11 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3311376

Immune evasion by staphylococci

11 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3311376

The role of nasal carriage in Staphylococcus aureus infections

11 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3311376

ACT: the Artemis Comparison Tool

11 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3311376

Regulatory and genomic plasticity of Staphylococcus aureus during persistent colonization and infection

11 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3311376

Complete genomes of two clinical Staphylococcus aureus strains: evidence for the rapid evolution of virulence and drug resistance

11 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3311376

Versatile and open software for comparing large genomes

11 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3311376

Typing of methicillin-resistant Staphylococcus aureus in a university hospital setting by using novel software for spa repeat determination and database management

11 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3311376

Relationships between Staphylococcus aureus genetic background, virulence factors, agr groups (alleles), and human disease

11 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3311376

Nasal carriage as a source of Staphylococcus aureus bacteremia. Study Group

11 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3311376

Multilocus sequence typing for characterization of methicillin-resistant and methicillin-susceptible clones of Staphylococcus aureus

11 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3311376

Tandem repeats finder: a program to analyze DNA sequences

11 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3311376

Rates of spontaneous mutation

11 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3311376

The CLUSTAL_X windows interface: flexible strategies for multiple sequence alignment aided by quality analysis tools

11 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3311376

Change in coreceptor use correlates with disease progression in HIV-1--infected individuals

11 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3311376

Dating of the human-ape splitting by a molecular clock of mitochondrial DNA

11 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3311376

xBASE2: a comprehensive resource for comparative bacterial genomics.

11 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3311376

Variations in spa types found in consecutive MRSA isolates from the same patients

24 September 2018

1 reference

Crossref

https://api.crossref.org/works/10.1073%2FPNAS.1113219109

Prophage Finder: a prophage loci prediction tool for prokaryotic genome sequences

21 January 2018

1 reference

12 December 2020

Are bloodstream leukocytes Trojan Horses for the metastasis of Staphylococcus aureus?

1 reference

12 December 2020

Nasal carriage of Staphylococcus aureus: frequency and molecular diversity in a randomly sampled Norwegian community population

1 reference

12 December 2020

Identification of the in vitro target of an iron-responsive AraC-like protein from Neisseria meningitidis that is in a regulatory cascade with Fur

1 reference

12 December 2020

Identifiers

DOI

10.1073/PNAS.1113219109

1 reference

release_f5tugt4x3ncwzihh2ffo4kxjqu

10 August 2017

0 references

1 reference

Fatcat

https://api.fatcat.wiki/v0/release/f5tugt4x3ncwzihh2ffo4kxjqu

24 November 2022

mapped directly with Wikidata item

1 reference

10 August 2017

1 reference