MDTraj: A Modern Open Library for the Analysis of Molecular Dynamics Trajectories. (Q35816082)

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27 February 2020

title

MDTraj: A Modern Open Library for the Analysis of Molecular Dynamics Trajectories (English)

1 reference

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27 February 2020

3

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Carlos X Hernández

6

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:26488642%20AND%20SRC:MED&resulttype=core&format=json

27 February 2020

Lee-Ping Wang

8

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:26488642%20AND%20SRC:MED&resulttype=core&format=json

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10

Vijay S Pande

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:26488642%20AND%20SRC:MED&resulttype=core&format=json

27 February 2020

2

Kyle A Beauchamp

1 reference

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27 February 2020

1

Robert T McGibbon

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:26488642%20AND%20SRC:MED&resulttype=core&format=json

27 February 2020

Christian R Schwantes

7

object named as

Christian R Schwantes

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:26488642%20AND%20SRC:MED&resulttype=core&format=json

27 February 2020

author name string

Christoph Klein

4

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:26488642%20AND%20SRC:MED&resulttype=core&format=json

27 February 2020

Jason M Swails

5

1 reference

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27 February 2020

Thomas J Lane

9

1 reference

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27 February 2020

language of work or name

English

0 references

publication date

1 October 2015

1 reference

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27 February 2020

number of pages

5

1 reference

based on heuristic

inferred from page(s)

published in

Biophysical Journal

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volume

109

1 reference

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page(s)

1528-1532

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issue

8

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describes a project that uses

27 February 2020

Jupyter notebook file

1 reference

1 reference

https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4623899/

cites work

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PTRAJ and CPPTRAJ: Software for Processing and Analysis of Molecular Dynamics Trajectory Data

27 July 2018

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27 July 2018

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27 July 2018

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27 July 2018

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27 July 2018

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27 July 2018

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27 July 2018

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Long-timescale molecular dynamics simulations of protein structure and function.

27 July 2018

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Scalable molecular dynamics with NAMD

27 July 2018

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Rapid calculation of RMSDs using a quaternion-based characteristic polynomial

27 July 2018

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VMD: visual molecular dynamics

27 July 2018

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Environment and exposure to solvent of protein atoms. Lysozyme and insulin

27 July 2018

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27 July 2018

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MSMBuilder2: Modeling Conformational Dynamics at the Picosecond to Millisecond Scale

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24 September 2018

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24 September 2018

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Dictionary of protein secondary structure: pattern recognition of hydrogen-bonded and geometrical features

24 September 2018

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Hydrogen bonding in globular proteins

24 September 2018

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ST-analyzer: a web-based user interface for simulation trajectory analysis

24 September 2018

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PubMed

https://pubmed.ncbi.nlm.nih.gov/26488642

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12 December 2020

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Ensembler: Enabling High-Throughput Molecular Simulations at the Superfamily Scale

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19 May 2022

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Identifiers

DOI

10.1016/J.BPJ.2015.08.015

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:26488642%20AND%20SRC:MED&resulttype=core&format=json

27 February 2020

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:26488642%20AND%20SRC:MED&resulttype=core&format=json

27 February 2020

1 reference