PanFP: pangenome-based functional profiles for microbial communities (Q35789372)

10 August 2017

PanFP: pangenome-based functional profiles for microbial communities (English)

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10 August 2017

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Michael S Robeson

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10 August 2017

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Se-Ran Jun

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10 August 2017

Loren J Hauser

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10 August 2017

Christopher W Schadt

series ordinal

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10 August 2017

Andrey A Gorin

series ordinal

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10 August 2017

26 September 2015

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10 August 2017

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479

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https://scigraph.springernature.com/pub.10.1186/s13104-015-1462-8

10 August 2017

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Analysis, optimization and verification of Illumina-generated 16S rRNA gene amplicon surveys

27 July 2018

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Predictive functional profiling of microbial communities using 16S rRNA marker gene sequences

27 July 2018

1 reference

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How much metagenomic sequencing is enough to achieve a given goal?

27 July 2018

1 reference

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Computational meta'omics for microbial community studies

27 July 2018

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Chapter 12: Human microbiome analysis

27 July 2018

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Metabolic reconstruction for metagenomic data and its application to the human microbiome

27 July 2018

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Metagenomics - a guide from sampling to data analysis

27 July 2018

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IMG: the Integrated Microbial Genomes database and comparative analysis system

27 July 2018

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The Pfam protein families database

27 July 2018

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KEGG for integration and interpretation of large-scale molecular data sets

27 July 2018

1 reference

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A semi-quantitative, synteny-based method to improve functional predictions for hypothetical and poorly annotated bacterial and archaeal genes

27 July 2018

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Trends and barriers to lateral gene transfer in prokaryotes

27 July 2018

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Metagenomic insights into the evolution, function, and complexity of the planktonic microbial community of Lake Lanier, a temperate freshwater ecosystem

27 July 2018

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UniProt Knowledgebase: a hub of integrated protein data

27 July 2018

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Diversity of 16S rRNA genes within individual prokaryotic genomes.

27 July 2018

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27 July 2018

A primer on metagenomics

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Gene ontology: tool for the unification of biology

27 July 2018

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Comparative metagenomics of toxic freshwater cyanobacteria bloom communities on two continents

27 July 2018

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An improved Greengenes taxonomy with explicit ranks for ecological and evolutionary analyses of bacteria and archaea

25 September 2018

1 reference

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Prokaryotic taxonomy in the sequencing era--the polyphasic approach revisited.

25 September 2018

1 reference

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Search and clustering orders of magnitude faster than BLAST

25 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4584126

QIIME allows analysis of high-throughput community sequencing data

25 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4584126

The TIGRFAMs database of protein families

25 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4584126

10.1186/S13104-015-1462-8

25 September 2018

Identifiers

DOI

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10 August 2017

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10 August 2017

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