Analysis of Nearly One Thousand Mammalian Mirtrons Reveals Novel Features of Dicer Substrates (Q35760914)

10 August 2017

Analysis of Nearly One Thousand Mammalian Mirtrons Reveals Novel Features of Dicer Substrates (English)

1 reference

10 August 2017

4

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Jiayu Wen

object named as

Jiayu Wen

1

0 references

Eric C Lai

object named as

Eric C Lai

5

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author name string

Erik Ladewig

2

1 reference

PubMed ID

26325366

10 August 2017

Sol Shenker

3

1 reference

10 August 2017

1 September 2015

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PLOS Computational Biology

10 August 2017

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10 August 2017

11

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10 August 2017

9

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10 August 2017

e1004441

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Creative Commons Attribution 4.0 International

10 August 2017

start time

1 September 2015

1 reference

April 2022 Public Data File from Crossref

copyright status

copyrighted

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cites work

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Analysis of 13 cell types reveals evidence for the expression of numerous novel primate- and tissue-specific microRNAs

2 October 2017

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Adaptive regulation of testis gene expression and control of male fertility by the Drosophila hairpin RNA pathway. [Corrected].

2 October 2017

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Regulation of microRNA biogenesis

2 October 2017

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Diversity of miRNAs, siRNAs, and piRNAs across 25 Drosophila cell lines

2 October 2017

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Evidence for the biogenesis of more than 1,000 novel human microRNAs

2 October 2017

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Diversity and dynamics of the Drosophila transcriptome

2 October 2017

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A retrotransposon-driven dicer isoform directs endogenous small interfering RNA production in mouse oocytes

2 October 2017

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Adult-specific functions of animal microRNAs

2 October 2017

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Loop-miRs: active microRNAs generated from single-stranded loop regions

2 October 2017

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Functional small RNAs are generated from select miRNA hairpin loops in flies and mammals

2 October 2017

1 reference

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Deep sequencing of small RNAs identifies canonical and non-canonical miRNA and endogenous siRNAs in mammalian somatic tissues

2 October 2017

1 reference

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Profiling of T helper cell-derived small RNAs reveals unique antisense transcripts and differential association of miRNAs with argonaute proteins 1 and 2

2 October 2017

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Argonaute divides its RNA guide into domains with distinct functions and RNA-binding properties

2 October 2017

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Discovery of hundreds of mirtrons in mouse and human small RNA data

2 October 2017

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Landscape of transcription in human cells

2 October 2017

1 reference

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microRNAs associated with the different human Argonaute proteins

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4556696

High-throughput assessment of microRNA activity and function using microRNA sensor and decoy libraries

2 October 2017

1 reference

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Quantitative functions of Argonaute proteins in mammalian development.

2 October 2017

1 reference

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Degradation of cellular mir-27 by a novel, highly abundant viral transcript is important for efficient virus replication in vivo

2 October 2017

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Biogenesis of mammalian microRNAs by a non-canonical processing pathway

2 October 2017

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Cell-type-based analysis of microRNA profiles in the mouse brain.

2 October 2017

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Common and distinct patterns of terminal modifications to mirtrons and canonical microRNAs

2 October 2017

1 reference

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Alternative miRNA biogenesis pathways and the interpretation of core miRNA pathway mutants

2 October 2017

1 reference

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The biogenesis and characterization of mammalian microRNAs of mirtron origin.

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4556696

Dicer recognizes the 5' end of RNA for efficient and accurate processing

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4556696

A role for noncanonical microRNAs in the mammalian brain revealed by phenotypic differences in Dgcr8 versus Dicer1 knockouts and small RNA sequencing

2 October 2017

1 reference

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Mirtrons: microRNA biogenesis via splicing

2 October 2017

1 reference

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Vive la différence: biogenesis and evolution of microRNAs in plants and animals

2 October 2017

1 reference

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Ordered progression of stage-specific miRNA profiles in the mouse B2 B-cell lineage

2 October 2017

1 reference

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Deep annotation of Drosophila melanogaster microRNAs yields insights into their processing, modification, and emergence

2 October 2017

1 reference

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Computational and experimental identification of mirtrons in Drosophila melanogaster and Caenorhabditis elegans

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4556696

Small RNA sorting: matchmaking for Argonautes.

2 October 2017

1 reference

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Conserved vertebrate mir-451 provides a platform for Dicer-independent, Ago2-mediated microRNA biogenesis

2 October 2017

1 reference

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MicroRNA biogenesis via splicing and exosome-mediated trimming in Drosophila

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4556696

Structural basis for 5'-nucleotide base-specific recognition of guide RNA by human AGO2

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4556696

A dicer-independent miRNA biogenesis pathway that requires Ago catalysis

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4556696

Mammalian microRNAs: experimental evaluation of novel and previously annotated genes

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4556696

MicroRNA activity is suppressed in mouse oocytes

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4556696

MicroRNA function is globally suppressed in mouse oocytes and early embryos

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4556696

The peculiarities of large intron splicing in animals

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4556696

Small silencing RNAs: an expanding universe

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4556696

Genome-scale spatiotemporal analysis of Caenorhabditis elegans microRNA promoter activity

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4556696

Mouse ES cells express endogenous shRNAs, siRNAs, and other Microprocessor-independent, Dicer-dependent small RNAs

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4556696

Biological principles of microRNA-mediated regulation: shared themes amid diversity

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4556696

A microRNA catalog of the developing chicken embryo identified by a deep sequencing approach

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4556696

Pseudogene-derived small interfering RNAs regulate gene expression in mouse oocytes

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4556696

Endogenous siRNAs from naturally formed dsRNAs regulate transcripts in mouse oocytes

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4556696

Evolution, biogenesis, expression, and target predictions of a substantially expanded set of Drosophila microRNAs

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4556696

2 October 2017

Mammalian mirtron genes

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4556696

A novel monoclonal antibody against human Argonaute proteins reveals unexpected characteristics of miRNAs in human blood cells

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4556696

The mirtron pathway generates microRNA-class regulatory RNAs in Drosophila

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4556696

Intronic microRNA precursors that bypass Drosha processing

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4556696

Structural basis for double-stranded RNA processing by Dicer

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4556696

Drosophila microRNAs exhibit diverse spatial expression patterns during embryonic development

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4556696

Subdivision of large introns in Drosophila by recursive splicing at nonexonic elements

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4556696

Microarray profiling of microRNAs reveals frequent coexpression with neighboring miRNAs and host genes

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4556696

Identification of mammalian microRNA host genes and transcription units

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4556696

Functional siRNAs and miRNAs Exhibit Strand Bias

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4556696

Asymmetry in the assembly of the RNAi enzyme complex

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4556696

Computational identification of Drosophila microRNA genes

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4556696

Dicer-independent, Ago2-mediated microRNA biogenesis in vertebrates

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4556696

A novel miRNA processing pathway independent of Dicer requires Argonaute2 catalytic activity

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4556696

Evolutionary flux of canonical microRNAs and mirtrons in Drosophila

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4556696

10.1371/JOURNAL.PCBI.1004441

12 July 2018

Identifiers

DOI

1 reference

journals/ploscb/WenLSML15

10 August 2017

1 reference

DBLP Dataset 2021-01-02

release_vbue3lnjljgs3e5b636y44knmm

28 January 2021

Fatcat ID

1 reference

Fatcat

https://api.fatcat.wiki/v0/release/vbue3lnjljgs3e5b636y44knmm

mapped directly with Wikidata item

24 November 2022

based on heuristic

PMCID

4556696

1 reference

10 August 2017

1 reference

PubMed ID

26325366