Decapping of long noncoding RNAs regulates inducible genes. (Q35754282)

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19 January 2020

title

Decapping of long noncoding RNAs regulates inducible genes (English)

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19 January 2020

1

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19 January 2020

Lisa J Lojek

2

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19 January 2020

Jeff Coller

5

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19 January 2020

author name string

Ahmad M Khalil

3

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19 January 2020

Kristian E Baker

4

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19 January 2020

publication date

5 January 2012

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19 January 2020

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19 January 2020

volume

45

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19 January 2020

issue

3

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19 January 2020

page(s)

279-291

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No-nonsense functions for long noncoding RNAs

19 January 2020

cites work

1 reference

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lncRNAs transactivate STAU1-mediated mRNA decay by duplexing with 3' UTRs via Alu elements

2 October 2017

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2 October 2017

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Anchoring nascent RNA to the DNA template could interfere with transcription

2 October 2017

1 reference

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Long intergenic noncoding RNAs: new links in cancer progression

2 October 2017

1 reference

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Identification of a quality-control mechanism for mRNA 5'-end capping

2 October 2017

1 reference

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Transcribed dark matter: meaning or myth?

2 October 2017

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Strand-specific RNA sequencing reveals extensive regulated long antisense transcripts that are conserved across yeast species

2 October 2017

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Long non-coding RNAs in nervous system function and disease

2 October 2017

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Co-translational mRNA decay in Saccharomyces cerevisiae

2 October 2017

1 reference

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Pervasive transcription constitutes a new level of eukaryotic genome regulation

2 October 2017

1 reference

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Long noncoding RNAs: functional surprises from the RNA world

2 October 2017

1 reference

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Many human large intergenic noncoding RNAs associate with chromatin-modifying complexes and affect gene expression

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3278590

Robust heat shock induces eIF2alpha-phosphorylation-independent assembly of stress granules containing eIF3 and 40S ribosomal subunits in budding yeast, Saccharomyces cerevisiae.

2 October 2017

1 reference

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H3 lysine 4 di- and tri-methylation deposited by cryptic transcription attenuates promoter activation

2 October 2017

1 reference

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Chromatin signature reveals over a thousand highly conserved large non-coding RNAs in mammals

2 October 2017

1 reference

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Bidirectional promoters generate pervasive transcription in yeast

2 October 2017

1 reference

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The control of mRNA decapping and P-body formation.

2 October 2017

1 reference

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Zn(II)-dependent histone deacetylase inhibitors: suberoylanilide hydroxamic acid and trichostatin A.

2 October 2017

1 reference

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Metabolic control of transcription: paradigms and lessons from Saccharomyces cerevisiae

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3278590

The transcriptional landscape of the yeast genome defined by RNA sequencing

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3278590

Budding yeast RNA polymerases I and II employ parallel mechanisms of transcriptional termination

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3278590

Cytoplasmic decay of intergenic transcripts in Saccharomyces cerevisiae

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3278590

Rules of engagement: co-transcriptional recruitment of pre-mRNA processing factors

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3278590

Nuclear pre-mRNA decapping and 5' degradation in yeast require the Lsm2-8p complex.

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3278590

Transcriptional remodeling in response to iron deprivation in Saccharomyces cerevisiae

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3278590

Analysis of recombinant yeast decapping enzyme

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3278590

Genomewide studies of histone deacetylase function in yeast

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3278590

The DCP2 protein is required for mRNA decapping in Saccharomyces cerevisiae and contains a functional MutT motif

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3278590

Rat1p and Xrn1p are functionally interchangeable exoribonucleases that are restricted to and required in the nucleus and cytoplasm, respectively

2 October 2017

1 reference

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Transcriptional regulation in the yeast GAL gene family: a complex genetic network.

2 October 2017

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Review: the dominant flocculation genes of Saccharomyces cerevisiae constitute a new subtelomeric gene family

2 October 2017

1 reference

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Structure of the multigene family of MAL loci in Saccharomyces

2 October 2017

1 reference

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Isolation and characterization of RAT1: an essential gene of Saccharomyces cerevisiae required for the efficient nucleocytoplasmic trafficking of mRNA

2 October 2017

1 reference

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XUTs are a class of Xrn1-sensitive antisense regulatory non-coding RNA in yeast.

2 October 2017

1 reference

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A ncRNA modulates histone modification and mRNA induction in the yeast GAL gene cluster

25 September 2018

1 reference

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The Rat1p 5′ to 3′ Exonuclease Degrades Telomeric Repeat-Containing RNA and Promotes Telomere Elongation in Saccharomyces cerevisiae

25 September 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/22226051

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

5'-exonuclease-2 of Saccharomyces cerevisiae. Purification and features of ribonuclease activity with comparison to 5'-exonuclease-1

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/22226051

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Identifiers

DOI

10.1016/J.MOLCEL.2011.11.025

1 reference

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19 January 2020

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:22226051%20AND%20SRC:MED&resulttype=core&format=json

19 January 2020

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:22226051%20AND%20SRC:MED&resulttype=core&format=json