Fluorescent protein barrel fluctuations and oxygen diffusion pathways in mCherry (Q35642836)

9 August 2017

Fluorescent protein barrel fluctuations and oxygen diffusion pathways in mCherry (English)

1 reference

9 August 2017

1 reference

1

Prem P Chapagain

1 reference

9 August 2017

Chola K Regmi

2

1 reference

PubMed ID

22191901

9 August 2017

William Castillo

series ordinal

3

1 reference

PubMed ID

22191901

9 August 2017

language of work or name

English

0 references

publication date

1 December 2011

1 reference

Journal of Chemical Physics

9 August 2017

1 reference

9 August 2017

135

1 reference

9 August 2017

23

1 reference

9 August 2017

235101

1 reference

O2 reactivity of flavoproteins: dynamic access of dioxygen to the active site and role of a H+ relay system in D-amino acid oxidase

9 August 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3248888

Carbamate transport in carbamoyl phosphate synthetase: a theoretical and experimental investigation

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3248888

Green fluorescent protein: structure, folding and chromophore maturation.

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3248888

A combined theoretical and experimental study of the ammonia tunnel in carbamoyl phosphate synthetase

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3248888

Multiple pathways guide oxygen diffusion into flavoenzyme active sites

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3248888

The dual-basin landscape in GFP folding

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3248888

Improving the photostability of bright monomeric orange and red fluorescent proteins

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3248888

Comparative protein structure modeling using Modeller

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3248888

Molecular dioxygen enters the active site of 12/15-lipoxygenase via dynamic oxygen access channels

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3248888

Exploring Molecular Oxygen Pathways in Hansenula polymorpha Copper-containing Amine Oxidase

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3248888

Structural basis for the fast maturation of Arthropoda green fluorescent protein.

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3248888

Imaging the migration pathways for O2, CO, NO, and Xe inside myoglobin

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3248888

A guide to choosing fluorescent proteins

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3248888

Finding gas diffusion pathways in proteins: application to O2 and H2 transport in CpI [FeFe]-hydrogenase and the role of packing defects

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3248888

Engineering fluorescent proteins.

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3248888

Improved monomeric red, orange and yellow fluorescent proteins derived from Discosoma sp. red fluorescent protein

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3248888

Extended molecular dynamics simulation of the carbon monoxide migration in sperm whale myoglobin

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3248888

MMTSB Tool Set: enhanced sampling and multiscale modeling methods for applications in structural biology.

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3248888

Crystal structure of venus, a yellow fluorescent protein with improved maturation and reduced environmental sensitivity

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3248888

A monomeric red fluorescent protein

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3248888

Green fluorescent protein (GFP): applications, structure, and related photophysical behavior

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3248888

Ligand diffusion in the catalase from Proteus mirabilis: a molecular dynamics study

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3248888

Cavities and packing defects in the structural dynamics of myoglobin

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3248888

Reducing the environmental sensitivity of yellow fluorescent protein. Mechanism and applications

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3248888

Refined crystal structure of DsRed, a red fluorescent protein from coral, at 2.0-A resolution

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3248888

Biochemistry, mutagenesis, and oligomerization of DsRed, a red fluorescent protein from coral

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3248888

Crystallographic and energetic analysis of binding of selected anions to the yellow variants of green fluorescent protein

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3248888

Fluorescent proteins from nonbioluminescent Anthozoa species

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3248888

The green fluorescent protein

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3248888

VMD: visual molecular dynamics

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3248888

Green fluorescent protein as a marker for gene expression

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3248888

Biological transport processes and space dimension

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3248888

Distal pocket residues affect picosecond ligand recombination in myoglobin. An experimental and molecular dynamics study of position 29 mutants

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3248888

Red fluorescent protein variants with incorporated non-natural amino acid analogues

12 July 2018

1 reference

Bright monomeric red fluorescent protein with an extended fluorescence lifetime.

21 January 2018

1 reference

Structural dynamics of myoglobin: an infrared kinetic study of ligand migration in mutants YQR and YQRF.

21 January 2018

1 reference

Quenching of protein fluorescence by oxygen. Detection of structural fluctuations in proteins on the nanosecond time scale.

21 January 2018

1 reference

Penetration of dioxygen into proteins studied by quenching of phosphorescence and fluorescence

21 January 2018

1 reference

Novel chromophores and buried charges control color in mFruits.

21 January 2018

1 reference

Computational studies of ammonia channel function in glutamine 5'-phosphoribosylpyrophosphate amidotransferase

21 January 2018

1 reference

Structural characterization of the tunnels of Mycobacterium tuberculosis truncated hemoglobin N from molecular dynamics simulations

21 January 2018

1 reference

CHARMM: A program for macromolecular energy, minimization, and dynamics calculations

21 January 2018

1 reference

A composite score for predicting errors in protein structure models

21 January 2018

1 reference

Reconstructing Potentials of Mean Force through Time Series Analysis of Steered Molecular Dynamics Simulations

21 January 2018

1 reference

Access of ligands to cavities within the core of a protein is rapid

21 January 2018

1 reference

Exploring gas permeability of cellular membranes and membrane channels with molecular dynamics

21 January 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3248888

Distal cavity fluctuations in myoglobin: protein motion and ligand diffusion

15 November 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/22191901

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Identifiers

DOI

10.1063/1.3660197

1 reference

9 August 2017

1 reference

9 August 2017

1 reference

PubMed ID

22191901