Extranucleosomal DNA binding directs nucleosome sliding by Chd1 (Q35598828)

9 August 2017

Extranucleosomal DNA binding directs nucleosome sliding by Chd1 (English)

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9 August 2017

Jeffrey N McKnight

1

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author name string

Katherine R Jenkins

2

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9 August 2017

Ilana M Nodelman

3

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9 August 2017

Thelma Escobar

4

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9 August 2017

Gregory D Bowman

5

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9 August 2017

language of work or name

English

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publication date

3 October 2011

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Molecular and Cellular Biology

9 August 2017

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9 August 2017

31

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9 August 2017

4746-4759

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9 August 2017

23

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describes a project that uses

9 August 2017

ImageJ

1 reference

11 June 2022

https://www.ebi.ac.uk/europepmc/webservices/rest/PMC3232923/fullTextXML

inferred from PubMed Central ID database lookup

cites work

The DNA-binding domain of the Chd1 chromatin-remodelling enzyme contains SANT and SLIDE domains

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3232923

The INO80 ATP-dependent chromatin remodeling complex is a nucleosome spacing factor

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3232923

Structure of RCC1 chromatin factor bound to the nucleosome core particle

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3232923

Conformational changes associated with template commitment in ATP-dependent chromatin remodeling by ISW2

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3232923

The biology of chromatin remodeling complexes

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3232923

Control of nucleosome positions by DNA sequence and remodeling machines

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3232923

Domain architecture of the catalytic subunit in the ISW2-nucleosome complex

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3232923

DNA sequence- and conformation-directed positioning of nucleosomes by chromatin-remodeling complexes

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3232923

Mechanisms of ATP dependent chromatin remodeling

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3232923

Identification of multiple distinct Snf2 subfamilies with conserved structural motifs.

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3232923

Analysis of nucleosome repositioning by yeast ISWI and Chd1 chromatin remodeling complexes

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3232923

Chromatin remodeling by ISW2 and SWI/SNF requires DNA translocation inside the nucleosome

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3232923

RF cloning: a restriction-free method for inserting target genes into plasmids

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3232923

TFIIIB subunit Bdp1p is required for periodic integration of the Ty1 retrotransposon and targeting of Isw2p to S. cerevisiae tDNAs

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3232923

Genome-wide identification of Isw2 chromatin-remodeling targets by localization of a catalytically inactive mutant

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3232923

Topography of the ISW2-nucleosome complex: insights into nucleosome spacing and chromatin remodeling

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3232923

Crystal structure and functional analysis of a nucleosome recognition module of the remodeling factor ISWI

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3232923

Widespread collaboration of Isw2 and Sin3-Rpd3 chromatin remodeling complexes in transcriptional repression

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3232923

In vivo chromatin remodeling by yeast ISWI homologs Isw1p and Isw2p

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3232923

The Isw2 chromatin remodeling complex represses early meiotic genes upon recruitment by Ume6p

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3232923

The chromo domain protein chd1p from budding yeast is an ATP-dependent chromatin-modifying factor

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3232923

Twenty-five years of the nucleosome, fundamental particle of the eukaryote chromosome

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3232923

Nucleosome movement by CHRAC and ISWI without disruption or trans-displacement of the histone octamer.

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3232923

Preparation of nucleosome core particle from recombinant histones

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3232923

Crystal structure of the nucleosome core particle at 2.8 A resolution

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3232923

A mammalian DNA-binding protein that contains a chromodomain and an SNF2/SWI2-like helicase domain

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3232923

Variation of half-site organization and DNA looping by AraC protein

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3232923

Differential DNA-binding specificity of the engrailed homeodomain: the role of residue 50.

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3232923

The chromatin-remodeling enzyme ACF is an ATP-dependent DNA length sensor that regulates nucleosome spacing

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3232923

Chromatin remodeling through directional DNA translocation from an internal nucleosomal site.

26 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3232923

Distinct activities of CHD1 and ACF in ATP-dependent chromatin assembly.

26 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3232923

Spatial contacts and nucleosome step movements induced by the NURF chromatin remodeling complex

26 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3232923

Biochemical and physiological properties of the DNA binding domain of AraC protein

26 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3232923

Ssn6-Tup1 requires the ISW2 complex to position nucleosomes in Saccharomyces cerevisiae

26 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3232923

Chromatin remodeling in vivo: evidence for a nucleosome sliding mechanism

26 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3232923

NADH-coupled microplate photometric assay for kinetic studies of ATP-hydrolyzing enzymes with low and high specific activities

26 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3232923

ACF, an ISWI-containing and ATP-utilizing chromatin assembly and remodeling factor

26 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3232923

DNA-binding and chromatin localization properties of CHD1

26 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3232923

How AraC interacts specifically with its target DNAs

26 September 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/21969605

12 December 2020

inferred from PubMed ID database lookup

New DNA sequence rules for high affinity binding to histone octamer and sequence-directed nucleosome positioning

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/21969605

12 December 2020

inferred from PubMed ID database lookup

ISWI Is an ATP-Dependent Nucleosome Remodeling Factor

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/21969605

12 December 2020

inferred from PubMed ID database lookup

Identifiers

DOI

10.1128/MCB.05735-11

1 reference

release_lrunlx6rcrdtbl3isji33rp2a4

9 August 2017

1 reference

Fatcat

https://api.fatcat.wiki/v0/release/lrunlx6rcrdtbl3isji33rp2a4

24 November 2022

mapped directly with Wikidata item

PMCID

3232923

1 reference

9 August 2017

1 reference