The nucleoid as a smart polymer. (Q35585047)

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:26005440%20AND%20SRC:MED&resulttype=core&format=json

15 February 2020

editorial

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title

The nucleoid as a smart polymer (English)

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15 February 2020

1

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Marco Cosentino Lagomarsino

15 February 2020

series ordinal

3

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15 February 2020

author name string

Bianca Sclavi

series ordinal

2

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15 February 2020

publication date

8 May 2015

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https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:26005440%20AND%20SRC:MED&resulttype=core&format=json

Frontiers in Microbiology

15 February 2020

published in

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15 February 2020

volume

6

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15 February 2020

page(s)

424

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The bacterial nucleoid: nature, dynamics and sister segregation

15 February 2020

cites work

1 reference

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Persistent super-diffusive motion of Escherichia coli chromosomal loci.

27 July 2018

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Polymer modeling of the E. coli genome reveals the involvement of locus positioning and macrodomain structuring for the control of chromosome conformation and segregation.

27 July 2018

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High-resolution mapping of the spatial organization of a bacterial chromosome

27 July 2018

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Nonspecific bridging-induced attraction drives clustering of DNA-binding proteins and genome organization.

27 July 2018

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Integration of syntactic and semantic properties of the DNA code reveals chromosomes as thermodynamic machines converting energy into information

27 July 2018

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Four-dimensional imaging of E. coli nucleoid organization and dynamics in living cells.

27 July 2018

1 reference

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Co-operative roles for DNA supercoiling and nucleoid-associated proteins in the regulation of bacterial transcription

27 July 2018

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A model of the large-scale organization of chromatin

27 July 2018

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DNA thermodynamic stability and supercoil dynamics determine the gene expression program during the bacterial growth cycle

27 July 2018

1 reference

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Physical manipulation of the Escherichia coli chromosome reveals its soft nature

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4424877

Physical descriptions of the bacterial nucleoid at large scales, and their biological implications

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4424877

Chromosomal macrodomains and associated proteins: implications for DNA organization and replication in gram negative bacteria

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4424877

Proteomic analyses of nucleoid-associated proteins in Escherichia coli, Pseudomonas aeruginosa, Bacillus subtilis, and Staphylococcus aureus

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4424877

Escherichia coli sister chromosome separation includes an abrupt global transition with concomitant release of late-splitting intersister snaps.

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4424877

Spatial and topological organization of DNA chains induced by gene co-localization

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4424877

Bacterial nucleoid-associated proteins, nucleoid structure and gene expression

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4424877

Protein-mediated molecular bridging: a key mechanism in biopolymer organization

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4424877

Mechanism of chromosome compaction and looping by the Escherichia coli nucleoid protein Fis

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4424877

Organization of the Escherichia coli chromosome into macrodomains and its possible functional implications.

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4424877

The architectural role of nucleoid-associated proteins in the organization of bacterial chromatin: a molecular perspective.

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4424877

Homeostatic regulation of supercoiling sensitivity coordinates transcription of the bacterial genome

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4424877

H-NS is a part of a thermally controlled mechanism for bacterial gene regulation.

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4424877

DNA supercoiling - a global transcriptional regulator for enterobacterial growth?

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4424877

Topological domain structure of the Escherichia coli chromosome

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4424877

Linear ordering and dynamic segregation of the bacterial chromosome

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4424877

H-NS: a universal regulator for a dynamic genome

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4424877

Increased bending rigidity of single DNA molecules by H-NS, a temperature and osmolarity sensor

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4424877

Really smart bioconjugates of smart polymers and receptor proteins

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4424877

'Smart' polymers and what they could do in biotechnology and medicine

27 July 2018

1 reference

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H-NS: a modulator of environmentally regulated gene expression.

27 July 2018

1 reference

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Identification of a cold shock transcriptional enhancer of the Escherichia coli gene encoding nucleoid protein H-NS.

27 July 2018

1 reference

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Combined collapse by bridging and self-adhesion in a prototypical polymer model inspired by the bacterial nucleoid.

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4424877

Bacterial nucleoid structure probed by active drag and resistive pulse sensing.

26 September 2018

1 reference

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Sister chromatid interactions in bacteria revealed by a site-specific recombination assay

26 September 2018

1 reference

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Gene silencing H-NS paralogue StpA forms a rigid protein filament along DNA that blocks DNA accessibility

26 September 2018

1 reference

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Gene order and chromosome dynamics coordinate spatiotemporal gene expression during the bacterial growth cycle

26 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4424877

General organisational principles of the transcriptional regulation system: a tree or a circle?

26 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4424877

Strong intranucleoid interactions organize the Escherichia coli chromosome into a nucleoid filament.

26 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4424877

A systematic in vitro study of nucleoprotein complexes formed by bacterial nucleoid-associated proteins revealing novel types of DNA organization.

26 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4424877

The MatP/matS site-specific system organizes the terminus region of the E. coli chromosome into a macrodomain.

26 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4424877

DNA dynamics vary according to macrodomain topography in the E. coli chromosome.

26 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4424877

Cooperative transitions of isolated Escherichia coli nucleoids: implications for the nucleoid as a cellular phase

26 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4424877

An architectural role of the Escherichia coli chromatin protein FIS in organising DNA.

26 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4424877

Fabrications and Applications of Stimulus-Responsive Polymer Films and Patterns on Surfaces: A Review

26 September 2018

1 reference

https://api.crossref.org/works/10.3389%2FFMICB.2015.00424

Theory of Microphase Separation in Block Copolymers

21 January 2018

1 reference

https://api.crossref.org/works/10.3389%2FFMICB.2015.00424

Parallel Genetic and Phenotypic Evolution of DNA Superhelicity in Experimental Populations of Escherichia coli

21 January 2018

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https://api.crossref.org/works/10.3389%2FFMICB.2015.00424

Smart polymers: Physical forms and bioengineering applications

21 January 2018

1 reference

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Collapse of Randomly Linked Polymers

21 January 2018

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12 December 2020

Environmental control of the in vivo oligomerization of nucleoid protein H-NS

1 reference

12 December 2020

The small nucleoid protein Fis is involved in Vibrio cholerae quorum sensing

1 reference

12 December 2020

Genome architecture and global gene regulation in bacteria: making progress towards a unified model?

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12 December 2020

Identifiers

DOI

10.3389/FMICB.2015.00424

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:26005440%20AND%20SRC:MED&resulttype=core&format=json

15 February 2020

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:26005440%20AND%20SRC:MED&resulttype=core&format=json

15 February 2020

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:26005440%20AND%20SRC:MED&resulttype=core&format=json