Analyses of soil microbial community compositions and functional genes reveal potential consequences of natural forest succession (Q35574941)

8 August 2017

Analyses of soil microbial community compositions and functional genes reveal potential consequences of natural forest succession (English)

1 reference

8 August 2017

ecological succession

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1 reference

6

Jizhong Zhou

1 reference

8 August 2017

7

Diqiang Li

1 reference

8 August 2017

Jing Cong

1

1 reference

8 August 2017

Yunfeng Yang

2

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8 August 2017

Xueduan Liu

3

1 reference

8 August 2017

Hui Lu

4

1 reference

8 August 2017

Xiao Liu

5

1 reference

8 August 2017

Huaqun Yin

8

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8 August 2017

Junjun Ding

9

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8 August 2017

Yuguang Zhang

10

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8 August 2017

language of work or name

English

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publication date

6 May 2015

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8 August 2017

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8 August 2017

5

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8 August 2017

10007

1 reference

describes a project that uses

8 August 2017

Cytoscape

object named as

Cytoscape

2 references

9 June 2022

https://europepmc.org/search?query=(METHODS:'Cytoscape')

based on heuristic

inferred from PubMed Central ID database lookup

CZ Software Mentions: A large dataset of software mentions in the biomedical literature

ArcGIS

object named as

ArcGIS

2 references

18 June 2022

https://europepmc.org/article/PMC/4421864

based on heuristic

inferred from PubMed Central ID database lookup

CZ Software Mentions: A large dataset of software mentions in the biomedical literature

exact match

https://scigraph.springernature.com/pub.10.1038/srep10007

0 references

cites work

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Microbial secondary succession in soil microcosms of a desert oasis in the Cuatro Cienegas Basin, Mexico

27 July 2018

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Molecular ecological network analyses.

27 July 2018

1 reference

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Ultra-high-throughput microbial community analysis on the Illumina HiSeq and MiSeq platforms

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4421864

Comparative metagenomic, phylogenetic and physiological analyses of soil microbial communities across nitrogen gradients

27 July 2018

1 reference

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FLASH: fast length adjustment of short reads to improve genome assemblies

27 July 2018

1 reference

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Microbial gene functions enriched in the Deepwater Horizon deep-sea oil plume

27 July 2018

1 reference

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Soil microbial community successional patterns during forest ecosystem restoration.

27 July 2018

1 reference

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Marine bacterial, archaeal and protistan association networks reveal ecological linkages.

27 July 2018

1 reference

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Functional molecular ecological networks

27 July 2018

1 reference

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Functional gene diversity of soil microbial communities from five oil-contaminated fields in China.

27 July 2018

1 reference

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Changes through time: integrating microorganisms into the study of succession

27 July 2018

1 reference

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Global patterns of 16S rRNA diversity at a depth of millions of sequences per sample

27 July 2018

1 reference

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Microbial secondary succession in a chronosequence of chalk grasslands

27 July 2018

1 reference

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Linking microbial community structure and function to seasonal differences in soil moisture and temperature in a Chihuahuan desert grassland

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4421864

Microbial community structure and its functional implications

27 July 2018

1 reference

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Testing the assumptions of chronosequences in succession

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4421864

The modularity of pollination networks

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4421864

Integration of biological networks and gene expression data using Cytoscape

27 July 2018

1 reference

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Naive Bayesian classifier for rapid assignment of rRNA sequences into the new bacterial taxonomy

27 July 2018

1 reference

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Altered soil microbial community at elevated CO(2) leads to loss of soil carbon.

27 July 2018

1 reference

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Distribution, diversity and ecology of aerobic CO-oxidizing bacteria

27 July 2018

1 reference

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Ecological networks and their fragility

27 July 2018

1 reference

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Mechanisms for soil moisture effects on activity of nitrifying bacteria.

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4421864

Effect of above-ground plant species on soil microbial community structure and its impact on suppression of Rhizoctonia solani AG3.

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4421864

Nitrogen fixation in methanogens: the archaeal perspective.

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4421864

DNA recovery from soils of diverse composition.

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4421864

Molecular analysis of the amy gene locus of Thermoanaerobacterium thermosulfurigenes EM1 encoding starch-degrading enzymes and a binding protein-dependent maltose transport system

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4421864

Integrated metagenomics and network analysis of soil microbial community of the forest timberline.

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4421864

Btrim: a fast, lightweight adapter and quality trimming program for next-generation sequencing technologies.

26 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4421864

Search and clustering orders of magnitude faster than BLAST

26 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4421864

Metagenomic analysis reveals a marked divergence in the structure of belowground microbial communities at elevated CO2.

26 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4421864

Molecular eco-systems biology: towards an understanding of community function

26 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4421864

The microbial engines that drive Earth's biogeochemical cycles.

26 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4421864

Diversity of green-like and red-like ribulose-1,5-bisphosphate carboxylase/oxygenase large-subunit genes (cbbL) in differently managed agricultural soils

26 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4421864

Community assembly and invasion: an experimental test of neutral versus niche processes

26 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4421864

The mcrA gene as an alternative to 16S rRNA in the phylogenetic analysis of methanogen populations in landfill.

26 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4421864

Litter decomposition, climate and liter quality

26 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4421864

The forgotten stage of forest succession: early-successional ecosystems on forest sites

26 September 2018

1 reference

Mechanisms of Maintenance of Species Diversity

21 January 2018

1 reference

Nitrogen mineralization and phenol accumulation along a fire chronosequence in northern Sweden.

21 January 2018

1 reference

Positive interactions among plant species for pollinator service: assessing the ‘magnet species’ concept with invasive species

21 January 2018

1 reference

PLANT DIVERSITY, SOIL MICROBIAL COMMUNITIES, AND ECOSYSTEM FUNCTION: ARE THERE ANY LINKS?

21 January 2018

1 reference

Effects of soil moisture on the temperature sensitivity of heterotrophic respiration vary seasonally in an old-field climate change experiment

21 January 2018

1 reference

Impact of Agricultural Land-use Change on Carbon Storage in Boreal Alaska

21 January 2018

1 reference

21 January 2018

1 reference

21 January 2018

Identifiers

DOI

10.1038/SREP10007

1 reference

8 August 2017

1 reference

8 August 2017

1 reference