Application of the maximum entropy principle to determine ensembles of intrinsically disordered proteins from residual dipolar couplings (Q35379375)

8 August 2017

Application of the maximum entropy principle to determine ensembles of intrinsically disordered proteins from residual dipolar couplings (English)

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8 August 2017

Melchor Sanchez-Martinez

1

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https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25358803%20AND%20SRC:MED&resulttype=core&format=json

7 June 2020

Ramon Crehuet

2

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7 June 2020

author name string

M Sanchez-Martinez

1

1 reference

8 August 2017

R Crehuet

2

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8 August 2017

language of work or name

English

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publication date

31 October 2014

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Physical Chemistry Chemical Physics

8 August 2017

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https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25358803%20AND%20SRC:MED&resulttype=core&format=json

7 June 2020

volume

16

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7 June 2020

issue

47

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7 June 2020

page(s)

26030-26039

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Intrinsically disordered proteins: regulation and disease

7 June 2020

cites work

1 reference

https://api.crossref.org/works/10.1039%2FC4CP03114H

Intrinsically Disordered Proteins in Human Diseases: Introducing the D 2 Concept

21 January 2018

1 reference

https://api.crossref.org/works/10.1039%2FC4CP03114H

Novel strategies for drug discovery based on Intrinsically Disordered Proteins (IDPs)

21 January 2018

1 reference

https://api.crossref.org/works/10.1039%2FC4CP03114H

Constructing ensembles for intrinsically disordered proteins

21 January 2018

1 reference

https://api.crossref.org/works/10.1039%2FC4CP03114H

Fuzziness: linking regulation to protein dynamics

21 January 2018

1 reference

https://api.crossref.org/works/10.1039%2FC4CP03114H

Analysis of molecular recognition features (MoRFs)

21 January 2018

1 reference

https://api.crossref.org/works/10.1039%2FC4CP03114H

Exploring the binding diversity of intrinsically disordered proteins involved in one-to-many binding

21 January 2018

1 reference

https://api.crossref.org/works/10.1039%2FC4CP03114H

The use of residual dipolar coupling in studying proteins by NMR.

21 January 2018

1 reference

https://api.crossref.org/works/10.1039%2FC4CP03114H

Measurement and analysis of NMR residual dipolar couplings for the study of intrinsically disordered proteins.

21 January 2018

1 reference

https://api.crossref.org/works/10.1039%2FC4CP03114H

Quantitative conformational analysis of partially folded proteins from residual dipolar couplings: application to the molecular recognition element of Sendai virus nucleoprotein

21 January 2018

1 reference

https://api.crossref.org/works/10.1039%2FC4CP03114H

Quantitative determination of the conformational properties of partially folded and intrinsically disordered proteins using NMR dipolar couplings

21 January 2018

1 reference

https://api.crossref.org/works/10.1039%2FC4CP03114H

Towards a robust description of intrinsic protein disorder using nuclear magnetic resonance spectroscopy.

21 January 2018

1 reference

https://api.crossref.org/works/10.1039%2FC4CP03114H

Calculation of ensembles of structures representing the unfolded state of an SH3 domain.

21 January 2018

1 reference

https://api.crossref.org/works/10.1039%2FC4CP03114H

Improved structural characterizations of the drkN SH3 domain unfolded state suggest a compact ensemble with native-like and non-native structure

21 January 2018

1 reference

https://api.crossref.org/works/10.1039%2FC4CP03114H

Calculation of residual dipolar couplings from disordered state ensembles using local alignment.

21 January 2018

1 reference

https://api.crossref.org/works/10.1039%2FC4CP03114H

Ensemble modeling of protein disordered states: experimental restraint contributions and validation

21 January 2018

1 reference

https://api.crossref.org/works/10.1039%2FC4CP03114H

Ensemble-based interpretations of NMR structural data to describe protein internal dynamics.

21 January 2018

1 reference

https://api.crossref.org/works/10.1039%2FC4CP03114H

Flexible-meccano: a tool for the generation of explicit ensemble descriptions of intrinsically disordered proteins and their associated experimental observables.

21 January 2018

1 reference

https://api.crossref.org/works/10.1039%2FC4CP03114H

Understanding the structural ensembles of a highly extended disordered protein

21 January 2018

1 reference

https://api.crossref.org/works/10.1039%2FC4CP03114H

Inferential structure determination.

21 January 2018

1 reference

https://api.crossref.org/works/10.1039%2FC4CP03114H

Information Theory and Statistical Mechanics

21 January 2018

1 reference

https://api.crossref.org/works/10.1039%2FC4CP03114H

Combining experiments and simulations using the maximum entropy principle

21 January 2018

1 reference

https://api.crossref.org/works/10.1039%2FC4CP03114H

SAXS ensemble refinement of ESCRT-III CHMP3 conformational transitions

21 January 2018

1 reference

https://api.crossref.org/works/10.1039%2FC4CP03114H

On the Use of Experimental Observations to Bias Simulated Ensembles

21 January 2018

1 reference

https://api.crossref.org/works/10.1039%2FC4CP03114H

Efficient and Minimal Method to Bias Molecular Simulations with Experimental Data

21 January 2018

1 reference

https://api.crossref.org/works/10.1039%2FC4CP03114H

On the statistical equivalence of restrained-ensemble simulations with the maximum entropy method

21 January 2018

1 reference

https://api.crossref.org/works/10.1039%2FC4CP03114H

Refinement of ensembles describing unstructured proteins using NMR residual dipolar couplings.

21 January 2018

1 reference

https://api.crossref.org/works/10.1039%2FC4CP03114H

Understanding biomolecular motion, recognition, and allostery by use of conformational ensembles.

21 January 2018

1 reference

https://api.crossref.org/works/10.1039%2FC4CP03114H

Modeling intrinsically disordered proteins with bayesian statistics

21 January 2018

1 reference

https://api.crossref.org/works/10.1039%2FC4CP03114H

Bayesian energy landscape tilting: towards concordant models of molecular ensembles

21 January 2018

1 reference

https://api.crossref.org/works/10.1039%2FC4CP03114H

Inference of structure ensembles of flexible biomolecules from sparse, averaged data

21 January 2018

1 reference

https://api.crossref.org/works/10.1039%2FC4CP03114H

Generative probabilistic models extend the scope of inferential structure determination

21 January 2018

1 reference

https://api.crossref.org/works/10.1039%2FC4CP03114H

Probabilistic Determination of Native State Ensembles of Proteins

21 January 2018

1 reference

https://api.crossref.org/works/10.1039%2FC4CP03114H

Recovering a representative conformational ensemble from underdetermined macromolecular structural data

21 January 2018

1 reference

https://api.crossref.org/works/10.1039%2FC4CP03114H

A structural model for unfolded proteins from residual dipolar couplings and small-angle x-ray scattering.

21 January 2018

1 reference

https://api.crossref.org/works/10.1039%2FC4CP03114H

Folding thermodynamics of peptides

21 January 2018

1 reference

https://api.crossref.org/works/10.1039%2FC4CP03114H

PROFASI: A Monte Carlo simulation package for protein folding and aggregation.

21 January 2018

1 reference

https://api.crossref.org/works/10.1039%2FC4CP03114H

NMR: prediction of molecular alignment from structure using the PALES software.

21 January 2018

1 reference

https://api.crossref.org/works/10.1039%2FC4CP03114H

Quantitative description of backbone conformational sampling of unfolded proteins at amino acid resolution from NMR residual dipolar couplings.

21 January 2018

1 reference

https://api.crossref.org/works/10.1039%2FC4CP03114H

ABSINTH: a new continuum solvation model for simulations of polypeptides in aqueous solutions

21 January 2018

1 reference

https://api.crossref.org/works/10.1039%2FC4CP03114H

Role of Prion Disease-Linked Mutations in the Intrinsically Disordered N-Terminal Domain of the Prion Protein

21 January 2018

1 reference

https://api.crossref.org/works/10.1039%2FC4CP03114H

Distinct phases of free α-synuclein--a Monte Carlo study

21 January 2018

1 reference

https://api.crossref.org/works/10.1039%2FC4CP03114H

Net charge per residue modulates conformational ensembles of intrinsically disordered proteins

21 January 2018

1 reference

https://api.crossref.org/works/10.1039%2FC4CP03114H

pE-DB: a database of structural ensembles of intrinsically disordered and of unfolded proteins

21 January 2018

1 reference

https://api.crossref.org/works/10.1039%2FC4CP03114H

Distinguishing among structural ensembles of the GB1 peptide: REMD simulations and NMR experiments

21 January 2018

1 reference

https://api.crossref.org/works/10.1039%2FC4CP03114H

The MUMO (minimal under-restraining minimal over-restraining) method for the determination of native state ensembles of proteins

21 January 2018

1 reference

https://api.crossref.org/works/10.1039%2FC4CP03114H

SS-map: Visualizing cooperative secondary structure elements in protein ensembles

21 January 2018

1 reference

https://api.crossref.org/works/10.1039%2FC4CP03114H

Testing the validity of ensemble descriptions of intrinsically disordered proteins

21 January 2018

1 reference

https://api.crossref.org/works/10.1039%2FC4CP03114H

Mapping the Conformational Landscape of Urea-Denatured Ubiquitin Using Residual Dipolar Couplings

21 January 2018

1 reference

https://api.crossref.org/works/10.1039%2FC4CP03114H

Helical Propensity in an Intrinsically Disordered Protein Accelerates Ligand Binding

21 January 2018

1 reference

https://api.crossref.org/works/10.1039%2FC4CP03114H

Theoretical framework for NMR residual dipolar couplings in unfolded proteins

21 January 2018

1 reference

https://api.crossref.org/works/10.1039%2FC4CP03114H

21 January 2018

Identifiers

DOI

10.1039/C4CP03114H

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25358803%20AND%20SRC:MED&resulttype=core&format=json

7 June 2020

1 reference