Transcriptome-wide mapping of pseudouridines: pseudouridine synthases modify specific mRNAs in S. cerevisiae (Q35374452)

8 August 2017

Transcriptome-wide mapping of pseudouridines: pseudouridine synthases modify specific mRNAs in S. cerevisiae (English)

1 reference

8 August 2017

0 references

3

Patrick O Brown

1 reference

8 August 2017

2

Daniel P Riordan

1 reference

8 August 2017

Alexander F Lovejoy

1

1 reference

PubMed ID

25353621

8 August 2017

language of work or name

English

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publication date

29 October 2014

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8 August 2017

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8 August 2017

9

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8 August 2017

10

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8 August 2017

e110799

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Creative Commons Attribution 4.0 International

8 August 2017

start time

29 October 2014

1 reference

April 2022 Public Data File from Crossref

copyright status

copyrighted

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cites work

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12 July 2018

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High-resolution mapping reveals a conserved, widespread, dynamic mRNA methylation program in yeast meiosis

12 July 2018

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NSun2-mediated cytosine-5 methylation of vault noncoding RNA determines its processing into regulatory small RNAs

12 July 2018

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Identification of direct targets and modified bases of RNA cytosine methyltransferases

12 July 2018

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RNA pseudouridylation: new insights into an old modification

12 July 2018

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The ribosome profiling strategy for monitoring translation in vivo by deep sequencing of ribosome-protected mRNA fragments

12 July 2018

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Comprehensive analysis of mRNA methylation reveals enrichment in 3' UTRs and near stop codons

12 July 2018

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Topology of the human and mouse m6A RNA methylomes revealed by m6A-seq

12 July 2018

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Widespread occurrence of 5-methylcytosine in human coding and non-coding RNA

12 July 2018

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Pseudouridines in spliceosomal snRNAs

12 July 2018

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Estimating the timing of early eukaryotic diversification with multigene molecular clocks

12 July 2018

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Converting nonsense codons into sense codons by targeted pseudouridylation

12 July 2018

1 reference

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Cellular dynamics of RNA modification

12 July 2018

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U2 snRNA is inducibly pseudouridylated at novel sites by Pus7p and snR81 RNP.

12 July 2018

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Yeast targets for mRNA methylation

12 July 2018

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Nucleotide modifications in three functionally important regions of the Saccharomyces cerevisiae ribosome affect translation accuracy

12 July 2018

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A pseudouridine synthase homologue is critical to cellular differentiation in Toxoplasma gondii

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4212993

Incorporation of pseudouridine into mRNA yields superior nonimmunogenic vector with increased translational capacity and biological stability

12 July 2018

1 reference

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Post-transcriptional gene regulation: from genome-wide studies to principles

12 July 2018

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From birth to death: the complex lives of eukaryotic mRNAs

12 July 2018

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Regulation of nuclear receptor activity by a pseudouridine synthase through posttranscriptional modification of steroid receptor RNA activator

12 July 2018

1 reference

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Ribosome structure and activity are altered in cells lacking snoRNPs that form pseudouridines in the peptidyl transferase center

12 July 2018

1 reference

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Induction of sporulation in Saccharomyces cerevisiae leads to the formation of N6-methyladenosine in mRNA: a potential mechanism for the activity of the IME4 gene

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4212993

Mapping pseudouridines in RNA molecules

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4212993

Pseudouridine in RNA: what, where, how, and why

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4212993

Point mutations in yeast CBF5 can abolish in vivo pseudouridylation of rRNA

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4212993

Pseudouridine mapping in the Saccharomyces cerevisiae spliceosomal U small nuclear RNAs (snRNAs) reveals that pseudouridine synthase pus1p exhibits a dual substrate specificity for U2 snRNA and tRNA.

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4212993

Stabilization of the anticodon stem-loop of tRNALys,3 by an A+-C base-pair and by pseudouridine

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4212993

The yeast gene YNL292w encodes a pseudouridine synthase (Pus4) catalyzing the formation of psi55 in both mitochondrial and cytoplasmic tRNAs

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4212993

Mapping to nucleotide resolution of pseudouridine residues in large subunit ribosomal RNAs from representative eukaryotes, prokaryotes, archaebacteria, mitochondria and chloroplasts

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4212993

Stabilization of RNA stacking by pseudouridine

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4212993

Four newly located pseudouridylate residues in Escherichia coli 23S ribosomal RNA are all at the peptidyltransferase center: analysis by the application of a new sequencing technique.

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4212993

N6-adenosine methylation in mRNA: substrate specificity and enzyme complexity

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4212993

Mapping of the 13 pseudouridine residues in Saccharomyces cerevisiae small subunit ribosomal RNA to nucleotide resolution

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4212993

Identification of methylated nucleosides in messenger RNA from Novikoff hepatoma cells

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4212993

HiTRACE: high-throughput robust analysis for capillary electrophoresis.

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4212993

A mutate-and-map strategy for inferring base pairs in structured nucleic acids: proof of concept on a DNA/RNA helix

26 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4212993

Inhibition of 6-methyladenine formation decreases the translation efficiency of dihydrofolate reductase transcripts.

26 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4212993

Reaction of pseudouridine and inosine with N-cyclohexyl-N'-beta-(4-methylmorpholinium)ethylcarbodiimide

26 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4212993

Ribonucleic acids from yeast which contain a fifth nucleotide

26 September 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/25353621

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

rRNA modifications in an intersubunit bridge of the ribosome strongly affect both ribosome biogenesis and activity

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/25353621

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Identifiers

DOI

10.1371/JOURNAL.PONE.0110799

1 reference

8 August 2017

0 references

1 reference

8 August 2017

1 reference

PubMed ID

25353621