Inhibitory activities of short linear motifs underlie Hox interactome specificity in vivo. (Q35359452)

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25869471%20AND%20SRC:MED&resulttype=core&format=json

5 March 2020

title

Inhibitory activities of short linear motifs underlie Hox interactome specificity in vivo (English)

1 reference

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5 March 2020

3

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5 March 2020

Bruno Hudry

5

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5 March 2020

Christine Brun

8

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5 March 2020

author name string

Manon Baëza

1

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5 March 2020

Séverine Viala

2

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5 March 2020

Amélie Dard

4

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5 March 2020

Marilyne Duffraisse

6

1 reference

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5 March 2020

Ana Rogulja-Ortmann

7

1 reference

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5 March 2020

Samir Merabet

9

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5 March 2020

language of work or name

English

0 references

publication date

14 April 2015

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5 March 2020

1 reference

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5 March 2020

volume

4

1 reference

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Gene-specific cell labeling using MiMIC transposons.

5 March 2020

cites work

1 reference

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A flexible extension of the Drosophila ultrabithorax homeodomain defines a novel Hox/PBC interaction mode

12 July 2018

1 reference

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The intrinsically disordered regions of the Drosophila melanogaster Hox protein ultrabithorax select interacting proteins based on partner topology

12 July 2018

1 reference

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Long non-coding RNAs as a source of new peptides

12 July 2018

1 reference

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A million peptide motifs for the molecular biologist

12 July 2018

1 reference

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Short linear motifs: ubiquitous and functionally diverse protein interaction modules directing cell regulation.

12 July 2018

1 reference

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Drosophila melanogaster Hox transcription factors access the RNA polymerase II machinery through direct homeodomain binding to a conserved motif of mediator subunit Med19

12 July 2018

1 reference

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Molecular insights into the origin of the Hox-TALE patterning system

12 July 2018

1 reference

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CRISPR/Cas9 and genome editing in Drosophila

12 July 2018

1 reference

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Spatial expression of transcription factors in Drosophila embryonic organ development

12 July 2018

1 reference

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The eukaryotic linear motif resource ELM: 10 years and counting

12 July 2018

1 reference

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Conserved regulation of cardiac calcium uptake by peptides encoded in small open reading frames

12 July 2018

1 reference

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Tracking context-specific transcription factors regulating hox activity

12 July 2018

1 reference

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Alternative splicing of intrinsically disordered regions and rewiring of protein interactions

12 July 2018

1 reference

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A versatile platform for creating a comprehensive UAS-ORFeome library in Drosophila

12 July 2018

1 reference

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Bimolecular fluorescence complementation (BiFC): a 5-year update and future perspectives

12 July 2018

1 reference

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Protein interactions of the transcription factor Hoxa1

12 July 2018

1 reference

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Hox proteins display a common and ancestral ability to diversify their interaction mode with the PBC class cofactors.

12 July 2018

1 reference

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HOT regions function as patterned developmental enhancers and have a distinct cis-regulatory signature

12 July 2018

1 reference

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Motif switches: decision-making in cell regulation

12 July 2018

1 reference

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Insights into Hox protein function from a large scale combinatorial analysis of protein domains

12 July 2018

1 reference

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Evolution of a derived protein-protein interaction between HoxA11 and Foxo1a in mammals caused by changes in intramolecular regulation

12 July 2018

1 reference

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On the border of the homeotic function: re-evaluating the controversial role of cofactor-recruiting motifs: the role of cofactor-recruiting motifs in conferring Hox evolutionary flexibility may critically depend on the protein environment.

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4392834

Hox genes define distinct progenitor sub-domains within the second heart field.

12 July 2018

1 reference

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Visualization of protein interactions in living Drosophila embryos by the bimolecular fluorescence complementation assay

12 July 2018

1 reference

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Genome-wide YFP fluorescence complementation screen identifies new regulators for telomere signaling in human cells

12 July 2018

1 reference

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Messy biology and the origins of evolutionary innovations

12 July 2018

1 reference

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Combinatorial binding leads to diverse regulatory responses: Lmd is a tissue-specific modulator of Mef2 activity

12 July 2018

1 reference

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Physical mechanisms of signal integration by WASP family proteins.

12 July 2018

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Hox specificity unique roles for cofactors and collaborators

12 July 2018

1 reference

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Classification of sequence signatures: a guide to Hox protein function.

12 July 2018

1 reference

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Adaptive changes in the transcription factor HoxA-11 are essential for the evolution of pregnancy in mammals

12 July 2018

1 reference

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Hox and senseless antagonism functions as a molecular switch to regulate EGF secretion in the Drosophila PNS.

12 July 2018

1 reference

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Contextual specificity in peptide-mediated protein interactions

12 July 2018

1 reference

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Analysis of homeodomain specificities allows the family-wide prediction of preferred recognition sites

12 July 2018

1 reference

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Variation in homeodomain DNA binding revealed by high-resolution analysis of sequence preferences

12 July 2018

1 reference

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Bimolecular fluorescence complementation (BiFC) analysis as a probe of protein interactions in living cells

12 July 2018

1 reference

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Transcription factors bind thousands of active and inactive regions in the Drosophila blastoderm

12 July 2018

1 reference

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A unique Extradenticle recruitment mode in the Drosophila Hox protein Ultrabithorax

12 July 2018

1 reference

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The role of Hox genes during vertebrate limb development

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4392834

Small peptide regulators of actin-based cell morphogenesis encoded by a polycistronic mRNA.

12 July 2018

1 reference

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An optimized transgenesis system for Drosophila using germ-line-specific phiC31 integrases

12 July 2018

1 reference

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P[acman]: a BAC transgenic platform for targeted insertion of large DNA fragments in D. melanogaster.

12 July 2018

1 reference

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TM4 microarray software suite

12 July 2018

1 reference

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Hotspots of transcription factor colocalization in the genome of Drosophila melanogaster

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4392834

Linear motifs: evolutionary interaction switches.

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4392834

The structural and dynamic basis of Ets-1 DNA binding autoinhibition.

12 July 2018

1 reference

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The origins of axial patterning in the metazoa: how old is bilateral symmetry?

12 July 2018

1 reference

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In vivo mutagenesis of the Hoxb8 hexapeptide domain leads to dominant homeotic transformations that mimic the loss-of-function mutations in genes of the Hoxb cluster

12 July 2018

1 reference

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Cytoscape: a software environment for integrated models of biomolecular interaction networks

12 July 2018

1 reference

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Hox clusters and bilaterian phylogeny

12 July 2018

1 reference

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Autoinhibitory domains: modular effectors of cellular regulation

12 July 2018

1 reference

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Hox repression of a target gene: extradenticle-independent, additive action through multiple monomer binding sites.

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4392834

SH2 domains, interaction modules and cellular wiring

12 July 2018

1 reference

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An extradenticle-induced conformational change in a HOX protein overcomes an inhibitory function of the conserved hexapeptide motif

12 July 2018

1 reference

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The gene teashirt is required for the development of Drosophila embryonic trunk segments and encodes a protein with widely spaced zinc finger motifs.

12 July 2018

1 reference

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Extracting insight from noisy cellular networks

12 July 2018

1 reference

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The switches.ELM resource: a compendium of conditional regulatory interaction interfaces

26 September 2018

1 reference

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Structure and intrinsic disorder in protein autoinhibition.

26 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4392834

Genetics. Revealing the dark matter of the genome.

26 September 2018

1 reference

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Monitoring the interference of protein-protein interactions in vivo by bimolecular fluorescence complementation: the DnaK case.

26 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4392834

The YPWM motif links Antennapedia to the basal transcriptional machinery.

26 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4392834

Common functions of central and posterior Hox genes for the repression of head in the trunk of Drosophila.

26 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4392834

Collaboration between Smads and a Hox protein in target gene repression.

26 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4392834

Comprehensive analysis of animal TALE homeobox genes: new conserved motifs and cases of accelerated evolution.

26 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4392834

A simple and efficient method to identify replacements of P-lacZ by P-Gal4 lines allows obtaining Gal4 insertions in the bithorax complex of Drosophila

26 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4392834

Physical and genetic interactions link hox function with diverse transcription factors and cell signaling proteins

26 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4392834

Requirement of Abdominal-A and Abdominal-B in the developing genitalia of Drosophila breaks the posterior downregulation rule

26 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4392834

Hox gene cross-regulatory interactions in the embryonic brain of Drosophila.

26 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4392834

Hox transcription factor ultrabithorax Ib physically and genetically interacts with disconnected interacting protein 1, a double-stranded RNA-binding protein.

26 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4392834

Homeodomain to hexapeptide or PBC-interaction-domain distance: size apparently matters.

26 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4392834

Tgfβ signaling acts on a Hox response element to confer specificity and diversity to Hox protein function

26 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4392834

The Hexapeptide and Linker Regions of the AbdA Hox Protein Regulate Its Activating and Repressive Functions

26 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4392834

Specificity of Distalless repression and limb primordia development by abdominal Hox proteins.

26 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4392834

abdominal A specifies one cell type in Drosophila by regulating one principal target gene.

26 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4392834

26 September 2018

Identifiers

DOI

10.7554/ELIFE.06034

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25869471%20AND%20SRC:MED&resulttype=core&format=json

5 March 2020

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25869471%20AND%20SRC:MED&resulttype=core&format=json

5 March 2020

1 reference