Comparing High-throughput Platforms for Sequencing the V4 Region of SSU-rDNA in Environmental Microbial Eukaryotic Diversity Surveys (Q35329346)

7 August 2017

Comparing High-throughput Platforms for Sequencing the V4 Region of SSU-rDNA in Environmental Microbial Eukaryotic Diversity Surveys (English)

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7 August 2017

1

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7 August 2017

10

Micah Dunthorn

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7 August 2017

6

Thorsten Stoeck

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7 August 2017

5

Tobias Siemensmeyer

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7 August 2017

4

Jingyun Chi

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7 August 2017

Jordan Mayor

2

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7 August 2017

John Bunge

3

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7 August 2017

Benjamin Wahl

7

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7 August 2017

Tobias Paprotka

8

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7 August 2017

Sabine Filker

9

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7 August 2017

20 November 2014

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The Journal of Eukaryotic Microbiology

7 August 2017

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7 August 2017

62

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7 August 2017

3

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7 August 2017

338-345

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Accuracy of protist diversity assessments: morphology compared with cloning and direct pyrosequencing of 18S rRNA genes and ITS regions using the conspicuous tintinnid ciliates as a case study

7 August 2017

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Depicting more accurate pictures of protistan community complexity using pyrosequencing of hypervariable SSU rRNA gene regions.

21 January 2018

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Vampires in the oceans: predatory cercozoan amoebae in marine habitats

21 January 2018

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Diversity patterns of uncultured Haptophytes unravelled by pyrosequencing in Naples Bay.

21 January 2018

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Fast, accurate error-correction of amplicon pyrosequences using Acacia.

21 January 2018

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Freshwater Perkinsea and marine-freshwater colonizations revealed by pyrosequencing and phylogeny of environmental rDNA.

21 January 2018

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Accounting for technical noise in single-cell RNA-seq experiments.

21 January 2018

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Global patterns of 16S rRNA diversity at a depth of millions of sequences per sample

21 January 2018

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Ultra-high-throughput microbial community analysis on the Illumina HiSeq and MiSeq platforms

21 January 2018

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QIIME allows analysis of high-throughput community sequencing data

21 January 2018

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Marine protistan diversity

21 January 2018

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Comparison of two next-generation sequencing technologies for resolving highly complex microbiota composition using tandem variable 16S rRNA gene regions

21 January 2018

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Comparing the hyper-variable V4 and V9 regions of the small subunit rDNA for assessment of ciliate environmental diversity

21 January 2018

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Ciliates and the rare biosphere: a review

21 January 2018

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Placing environmental next-generation sequencing amplicons from microbial eukaryotes into a phylogenetic context

21 January 2018

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Search and clustering orders of magnitude faster than BLAST

21 January 2018

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UCHIME improves sensitivity and speed of chimera detection

21 January 2018

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454 pyrosequencing to describe microbial eukaryotic community composition, diversity and relative abundance: a test for marine haptophytes

21 January 2018

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Field guide to next-generation DNA sequencers

21 January 2018

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Multivariate Cutoff Level Analysis (MultiCoLA) of large community data sets

21 January 2018

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The Protist Ribosomal Reference database (PR2): a catalog of unicellular eukaryote small sub-unit rRNA sequences with curated taxonomy

21 January 2018

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Effect of PCR amplicon size on assessments of clone library microbial diversity and community structure

21 January 2018

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Updating benchtop sequencing performance comparison

21 January 2018

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A holistic approach to marine eco-systems biology

21 January 2018

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Large scale loss of data in low-diversity illumina sequencing libraries can be recovered by deferred cluster calling

21 January 2018

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Wrinkles in the rare biosphere: pyrosequencing errors can lead to artificial inflation of diversity estimates

21 January 2018

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Ultra-deep sequencing of foraminiferal microbarcodes unveils hidden richness of early monothalamous lineages in deep-sea sediments

21 January 2018

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Ancient DNA complements microfossil record in deep-sea subsurface sediments

21 January 2018

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Environmental microbiology through the lens of high-throughput DNA sequencing: synopsis of current platforms and bioinformatics approaches

21 January 2018

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Patterns of rare and abundant marine microbial eukaryotes

21 January 2018

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Performance comparison of benchtop high-throughput sequencing platforms

21 January 2018

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Direct comparisons of Illumina vs. Roche 454 sequencing technologies on the same microbial community DNA sample

21 January 2018

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Swarm: robust and fast clustering method for amplicon-based studies

21 January 2018

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Environmental monitoring through protist next-generation sequencing metabarcoding: assessing the impact of fish farming on benthic foraminifera communities

21 January 2018

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Eukaryotic richness in the abyss: insights from pyrotag sequencing

21 January 2018

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Improved tools for biological sequence comparison

21 January 2018

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General patterns of diversity in major marine microeukaryote lineages

21 January 2018

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Removing noise from pyrosequenced amplicons

21 January 2018

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Pyrosequencing for assessing diversity of eukaryotic microbes: analysis of data on marine planktonic ciliates and comparison with traditional methods

21 January 2018

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A morphogenetic survey on ciliate plankton from a mountain lake pinpoints the necessity of lineage-specific barcode markers in microbial ecology.

21 January 2018

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Multiple marker parallel tag environmental DNA sequencing reveals a highly complex eukaryotic community in marine anoxic water

21 January 2018

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Massively parallel tag sequencing reveals the complexity of anaerobic marine protistan communities

21 January 2018

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Can abundance of protists be inferred from sequence data: a case study of foraminifera

21 January 2018

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PEAR: a fast and accurate Illumina Paired-End reAd mergeR.

21 January 2018

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21 January 2018

Identifiers

DOI

10.1111/JEU.12187

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7 August 2017

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