Bursts of nonsynonymous substitutions in HIV-1 evolution reveal instances of positive selection at conservative protein sites (Q35221142)

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:17164328%20AND%20SRC:MED&resulttype=core&format=json

23 December 2019

title

Bursts of nonsynonymous substitutions in HIV-1 evolution reveal instances of positive selection at conservative protein sites (English)

1 reference

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23 December 2019

0 references

1

1 reference

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23 December 2019

2

Jonathan Dushoff

1 reference

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23 December 2019

3

Simon A Levin

1 reference

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23 December 2019

author name string

Alexey S Kondrashov

series ordinal

4

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:17164328%20AND%20SRC:MED&resulttype=core&format=json

23 December 2019

language of work or name

English

0 references

publication date

12 December 2006

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:17164328%20AND%20SRC:MED&resulttype=core&format=json

Proceedings of the National Academy of Sciences of the United States of America

23 December 2019

number of pages

6

1 reference

based on heuristic

inferred from page(s)

published in

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:17164328%20AND%20SRC:MED&resulttype=core&format=json

23 December 2019

volume

103

1 reference

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23 December 2019

issue

51

1 reference

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23 December 2019

page(s)

19396-19401

1 reference

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Population genetic estimation of the loss of genetic diversity during horizontal transmission of HIV-1.

23 December 2019

cites work

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1698441

Molecular signatures of natural selection

13 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1698441

Not so different after all: a comparison of methods for detecting amino acid sites under selection

13 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1698441

Evidence for heterogeneous selective pressures in the evolution of the env gene in different human immunodeficiency virus type 1 subtypes

13 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1698441

Multiple V1/V2 env variants are frequently present during primary infection with human immunodeficiency virus type 1

13 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1698441

Modeling the site-specific variation of selection patterns along lineages

13 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1698441

Positive selection detection in 40,000 human immunodeficiency virus (HIV) type 1 sequences automatically identifies drug resistance and positive fitness mutations in HIV protease and reverse transcriptase

13 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1698441

Comparative study of adaptive molecular evolution in different human immunodeficiency virus groups and subtypes

13 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1698441

The Bioperl toolkit: Perl modules for the life sciences

13 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1698441

Codon-substitution models for detecting molecular adaptation at individual sites along specific lineages

13 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1698441

Adaptive protein evolution in Drosophila

13 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1698441

Timing the ancestor of the HIV-1 pandemic strains

13 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1698441

Codon-substitution models for heterogeneous selection pressure at amino acid sites

13 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1698441

Reevaluation of amino acid variability of the human immunodeficiency virus type 1 gp120 envelope glycoprotein and prediction of new discontinuous epitopes

13 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1698441

Structure of an HIV gp120 envelope glycoprotein in complex with the CD4 receptor and a neutralizing human antibody

13 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1698441

VMD: visual molecular dynamics

13 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1698441

Adaptive protein evolution at the Adh locus in Drosophila

13 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1698441

Two types of amino acid substitutions in protein evolution

13 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1698441

Molecular Evolution Over the Mutational Landscape

13 July 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.0609484103

Widespread adaptive evolution in the human immunodeficiency virus type 1 genome

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.0609484103

A robust measure of HIV-1 population turnover within chronically infected individuals.

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.0609484103

Positive selection at sites of multiple amino acid replacements since rat–mouse divergence

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.0609484103

Maximum likelihood analysis of adaptive evolution in HIV-1 gp120 env gene

21 January 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/17164328

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

The detection of deleterious selection using ancestors inferred from a phylogenetic history

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/17164328

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Identifiers

DOI

10.1073/PNAS.0609484103

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:17164328%20AND%20SRC:MED&resulttype=core&format=json

23 December 2019

0 references

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:17164328%20AND%20SRC:MED&resulttype=core&format=json

23 December 2019

1 reference