The challenge of constructing large phylogenetic trees (Q35202971)

7 August 2017

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title

The challenge of constructing large phylogenetic trees (English)

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7 August 2017

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2

Amy C Driskell

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7 August 2017

Michael J Sanderson

1

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7 August 2017

1 August 2003

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7 August 2017

Trends in Plant Science

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7 August 2017

8

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7 August 2017

374-379

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7 August 2017

8

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Phylogenetics of Seed Plants: An Analysis of Nucleotide Sequences from the Plastid Gene rbcL

7 August 2017

1 reference

https://api.crossref.org/works/10.1016%2FS1360-1385%2803%2900165-1

7 January 2021

Inferring complex phylogenies using parsimony: an empirical approach using three large DNA data sets for angiosperms

1 reference

https://api.crossref.org/works/10.1016%2FS1360-1385%2803%2900165-1

7 January 2021

Simultaneous parsimony jackknife analysis of 2538rbcL DNA sequences reveals support for major clades of green plants, land plants, seed plants and flowering plants

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https://api.crossref.org/works/10.1016%2FS1360-1385%2803%2900165-1

7 January 2021

Cross-referencing eukaryotic genomes: TIGR Orthologous Gene Alignments (TOGA)

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https://api.crossref.org/works/10.1016%2FS1360-1385%2803%2900165-1

7 January 2021

Phylogeny of seed plants based on evidence from eight genes

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https://api.crossref.org/works/10.1016%2FS1360-1385%2803%2900165-1

7 January 2021

Is it better to add taxa or characters to a difficult phylogenetic problem?

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https://api.crossref.org/works/10.1016%2FS1360-1385%2803%2900165-1

7 January 2021

Inferring complex phylogenies.

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https://api.crossref.org/works/10.1016%2FS1360-1385%2803%2900165-1

7 January 2021

Large-scale phylogenies and measuring the performance of phylogenetic estimators

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https://api.crossref.org/works/10.1016%2FS1360-1385%2803%2900165-1

7 January 2021

The analysis of 100 genes supports the grouping of three highly divergent amoebae: Dictyostelium, Entamoeba, and Mastigamoeba

1 reference

https://api.crossref.org/works/10.1016%2FS1360-1385%2803%2900165-1

7 January 2021

Probabilistic analysis indicates discordant gene trees in chloroplast evolution

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https://api.crossref.org/works/10.1016%2FS1360-1385%2803%2900165-1

7 January 2021

Plastid genome phylogeny and a model of amino acid substitution for proteins encoded by chloroplast DNA.

1 reference

https://api.crossref.org/works/10.1016%2FS1360-1385%2803%2900165-1

7 January 2021

Whole chloroplast genome comparison of rice, maize, and wheat: implications for chloroplast gene diversification and phylogeny of cereals

1 reference

https://api.crossref.org/works/10.1016%2FS1360-1385%2803%2900165-1

7 January 2021

Does adding characters with missing data increase or decrease phylogenetic accuracy?

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https://api.crossref.org/works/10.1016%2FS1360-1385%2803%2900165-1

7 January 2021

Fragmentary taxa, missing data, and ambiguity: mistaken assumptions and conclusions

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https://api.crossref.org/works/10.1016%2FS1360-1385%2803%2900165-1

7 January 2021

Analyzing large data sets: rbcL 500 revisited

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https://api.crossref.org/works/10.1016%2FS1360-1385%2803%2900165-1

7 January 2021

Stochastic search strategy for estimation of maximum likelihood phylogenetic trees.

1 reference

https://api.crossref.org/works/10.1016%2FS1360-1385%2803%2900165-1

7 January 2021

NJML: a hybrid algorithm for the neighbor-joining and maximum-likelihood methods.

1 reference

https://api.crossref.org/works/10.1016%2FS1360-1385%2803%2900165-1

7 January 2021

Parallel implementation of DNAml program on message-passing architectures

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https://api.crossref.org/works/10.1016%2FS1360-1385%2803%2900165-1

7 January 2021

Genetic algorithm-based maximum-likelihood analysis for molecular phylogeny

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https://api.crossref.org/works/10.1016%2FS1360-1385%2803%2900165-1

7 January 2021

Phylogeny estimation: traditional and Bayesian approaches

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https://api.crossref.org/works/10.1016%2FS1360-1385%2803%2900165-1

7 January 2021

The Parsimony Ratchet, a New Method for Rapid Parsimony Analysis

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https://api.crossref.org/works/10.1016%2FS1360-1385%2803%2900165-1

7 January 2021

Markov Chasin Monte Carlo Algorithms for the Bayesian Analysis of Phylogenetic Trees

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https://api.crossref.org/works/10.1016%2FS1360-1385%2803%2900165-1

7 January 2021

Improved bootstrap confidence limits in large-scale phylogenies, with an example from Neo-Astragalus (Leguminosae).

1 reference

https://api.crossref.org/works/10.1016%2FS1360-1385%2803%2900165-1

7 January 2021

Overcredibility of molecular phylogenies obtained by Bayesian phylogenetics

1 reference

https://api.crossref.org/works/10.1016%2FS1360-1385%2803%2900165-1

7 January 2021

Bayes or bootstrap? A simulation study comparing the performance of Bayesian Markov chain Monte Carlo sampling and bootstrapping in assessing phylogenetic confidence

1 reference

https://api.crossref.org/works/10.1016%2FS1360-1385%2803%2900165-1

7 January 2021

Molecular and morphological supertrees for eutherian (placental) mammals

1 reference

https://api.crossref.org/works/10.1016%2FS1360-1385%2803%2900165-1

7 January 2021

A genus-level supertree of the Dinosauria

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https://api.crossref.org/works/10.1016%2FS1360-1385%2803%2900165-1

7 January 2021

Building Supertrees: An Empirical Assessment Using the Grass Family (Poaceae)

1 reference

https://api.crossref.org/works/10.1016%2FS1360-1385%2803%2900165-1

7 January 2021

Resolution of a supertree/supermatrix paradox

1 reference

https://api.crossref.org/works/10.1016%2FS1360-1385%2803%2900165-1

7 January 2021

Matrix representation with parsimony, taxonomic congruence, and total evidence

1 reference

https://api.crossref.org/works/10.1016%2FS1360-1385%2803%2900165-1

7 January 2021

Assessment of the accuracy of matrix representation with parsimony analysis supertree construction

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https://api.crossref.org/works/10.1016%2FS1360-1385%2803%2900165-1

7 January 2021

Confidence Limits on Phylogenies: an Approach using the Bootstrap

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https://api.crossref.org/works/10.1016%2FS1360-1385%2803%2900165-1

7 January 2021

Accommodating phylogenetic uncertainty in evolutionary studies.

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https://api.crossref.org/works/10.1016%2FS1360-1385%2803%2900165-1

7 January 2021

From gene to organismal phylogeny: reconciled trees and the gene tree/species tree problem

1 reference

https://api.crossref.org/works/10.1016%2FS1360-1385%2803%2900165-1

7 January 2021

Going nuclear: gene family evolution and vertebrate phylogeny reconciled

1 reference

https://api.crossref.org/works/10.1016%2FS1360-1385%2803%2900165-1

7 January 2021

Obtaining maximal concatenated phylogenetic data sets from large sequence databases

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https://api.crossref.org/works/10.1016%2FS1360-1385%2803%2900165-1

7 January 2021

Phylogenetic supertrees: Assembling the trees of life

1 reference

https://api.crossref.org/works/10.1016%2FS1360-1385%2803%2900165-1

7 January 2021

The (Super)Tree of Life: Procedures, Problems, and Prospects

1 reference

https://api.crossref.org/works/10.1016%2FS1360-1385%2803%2900165-1

7 January 2021

A supertree method for rooted trees

1 reference

https://api.crossref.org/works/10.1016%2FS1360-1385%2803%2900165-1

7 January 2021

10.1016/S1360-1385(03)00165-1

Identifiers

DOI

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7 August 2017

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PubMed ID

12927970