SHAPE analysis of the FIV Leader RNA reveals a structural switch potentially controlling viral packaging and genome dimerization (Q35174691)

6 August 2017

SHAPE analysis of the FIV Leader RNA reveals a structural switch potentially controlling viral packaging and genome dimerization (English)

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6 August 2017

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7

Andrew M L Lever

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6 August 2017

Julia C Kenyon

1

1 reference

6 August 2017

Sian J Tanner

2

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6 August 2017

Michal Legiewicz

3

1 reference

6 August 2017

Pretty S Phillip

4

1 reference

6 August 2017

Tahir A Rizvi

5

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6 August 2017

Stuart F J Le Grice

6

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6 August 2017

language of work or name

English

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publication date

5 May 2011

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6 August 2017

Nucleic Acids Research

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6 August 2017

39

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6 August 2017

6692-6704

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6 August 2017

15

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Creative Commons Attribution-NonCommercial 3.0 Unported

6 August 2017

start time

4 October 2016

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April 2022 Public Data File from Crossref

copyright status

copyrighted

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cites work

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Optimal packaging of FIV genomic RNA depends upon a conserved long-range interaction and a palindromic sequence within gag

13 July 2018

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Feline immunodeficiency virus (FIV) as a model for study of lentivirus infections: parallels with HIV.

13 July 2018

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An RNA structural switch regulates diploid genome packaging by Moloney murine leukemia virus

13 July 2018

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Feline immunodeficiency virus (FIV) in wild Pallas' cats

13 July 2018

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Architecture and secondary structure of an entire HIV-1 RNA genome

13 July 2018

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HIV-1 RNA dimerization: It takes two to tango

13 July 2018

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Pathological manifestations of feline immunodeficiency virus (FIV) infection in wild African lions

13 July 2018

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Influence of nucleotide identity on ribose 2'-hydroxyl reactivity in RNA

13 July 2018

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Accurate SHAPE-directed RNA structure determination

13 July 2018

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The secondary structure of the 5' end of the FIV genome reveals a long-range interaction between R/U5 and gag sequences, and a large, stable stem-loop

13 July 2018

1 reference

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Noncovalent probes for the investigation of structure and dynamics of protein-nucleic acid assemblies: the case of NC-mediated dimerization of genomic RNA in HIV-1

13 July 2018

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13 July 2018

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RNA secondary structure of the feline immunodeficiency virus 5'UTR and Gag coding region

13 July 2018

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High-throughput SHAPE analysis reveals structures in HIV-1 genomic RNA strongly conserved across distinct biological states

13 July 2018

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Human gene therapy vectors derived from feline lentiviruses

13 July 2018

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Genomic organization, sequence divergence, and recombination of feline immunodeficiency virus from lions in the wild

13 July 2018

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13 July 2018

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Dissecting the protein-RNA and RNA-RNA interactions in the nucleocapsid-mediated dimerization and isomerization of HIV-1 stemloop 1.

13 July 2018

1 reference

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Sequences intervening between the core packaging determinants are dispensable for maintaining the packaging potential and propagation of feline immunodeficiency virus transfer vector RNAs

13 July 2018

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How retroviruses select their genomes

13 July 2018

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RNA structure analysis at single nucleotide resolution by selective 2'-hydroxyl acylation and primer extension (SHAPE)

13 July 2018

1 reference

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The critical role of proximal gag sequences in feline immunodeficiency virus genome encapsidation

13 July 2018

1 reference

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The retroviral RNA dimer linkage: different structures may reflect different roles

13 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3159445

Dimerization of retroviral RNA genomes: an inseparable pair.

13 July 2018

1 reference

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Kissing complex-mediated dimerisation of HIV-1 RNA: coupling extended duplex formation to ribozyme cleavage

13 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3159445

Mapping the encapsidation determinants of feline immunodeficiency virus

13 July 2018

1 reference

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Role of stem B, loop B, and nucleotides next to the primer binding site and the kissing-loop domain in human immunodeficiency virus type 1 replication and genomic-RNA dimerization

13 July 2018

1 reference

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Primate and feline lentivirus vector RNA packaging and propagation by heterologous lentivirus virions

13 July 2018

1 reference

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Human immunodeficiency virus types 1 and 2 differ in the predominant mechanism used for selection of genomic RNA for encapsidation

13 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3159445

Mutations in the kissing-loop hairpin of human immunodeficiency virus type 1 reduce viral infectivity as well as genomic RNA packaging and dimerization

13 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3159445

Evidence that a kissing loop structure facilitates genomic RNA dimerisation in HIV-1.

13 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3159445

A loop-loop "kissing" complex is the essential part of the dimer linkage of genomic HIV-1 RNA

13 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3159445

Isolation of a T-lymphotropic virus from domestic cats with an immunodeficiency-like syndrome

13 July 2018

1 reference

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Nucleotide sequence analysis of feline immunodeficiency virus: genome organization and relationship to other lentiviruses

13 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3159445

Nucleotide sequence and genomic organization of feline immunodeficiency virus

13 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3159445

Pathogenesis of experimentally induced feline immunodeficiency virus infection in cats.

13 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3159445

Feline immunodeficiency virus (FIV) infection in the cat as a model for HIV infection in man: FIV-induced impairment of immune function

13 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3159445

Worldwide prevalence of lentivirus infection in wild feline species: epidemiologic and phylogenetic aspects

13 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3159445

An updated nation-wide epidemiological survey of feline immunodeficiency virus (FIV) infection in Japan

13 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3159445

Mapping of nucleocapsid residues important for HIV-1 genomic RNA dimerization and packaging

27 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3159445

Sequences within the gag gene of feline immunodeficiency virus (FIV) are important for efficient RNA encapsidation

27 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3159445

Delineation of sequences important for efficient packaging of feline immunodeficiency virus RNA.

27 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3159445

A novel long distance base-pairing interaction in human immunodeficiency virus type 1 RNA occludes the Gag start codon

27 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3159445

Kissing-loop model of HIV-1 genome dimerization: HIV-1 RNAs can assume alternative dimeric forms, and all sequences upstream or downstream of hairpin 248-271 are dispensable for dimer formation

27 September 2018

1 reference

12 December 2020

A kissing complex together with a stable dimer is involved in the HIV-1Lai RNA dimerization process in vitro

1 reference

12 December 2020

HIV-1 genome dimerization: formation kinetics and thermal stability of dimeric HIV-1Lai RNAs are not improved by the 1-232 and 296-790 regions flanking the kissing-loop domain

1 reference

12 December 2020

The HIV-1 leader RNA conformational switch regulates RNA dimerization but does not regulate mRNA translation

1 reference

12 December 2020

Duplication of the primary encapsidation and dimer linkage region of human immunodeficiency virus type 1 RNA results in the appearance of monomeric RNA in virions

1 reference

12 December 2020

Identifiers

DOI

10.1093/NAR/GKR252

1 reference

6 August 2017

1 reference

6 August 2017

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