Topoisomerase II binds nucleosome-free DNA and acts redundantly with topoisomerase I to enhance recruitment of RNA Pol II in budding yeast. (Q35149596)

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8 February 2020

title

Topoisomerase II binds nucleosome-free DNA and acts redundantly with topoisomerase I to enhance recruitment of RNA Pol II in budding yeast (English)

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8 February 2020

3

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4

Michael Grunstein

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8 February 2020

author name string

Adam S Sperling

series ordinal

1

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8 February 2020

Kyeong Soo Jeong

series ordinal

2

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8 February 2020

language of work or name

English

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publication date

19 July 2011

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Proceedings of the National Academy of Sciences of the United States of America

8 February 2020

published in

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8 February 2020

volume

108

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8 February 2020

page(s)

12693-12698

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8 February 2020

issue

31

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A comprehensive genomic binding map of gene and chromatin regulatory proteins in Saccharomyces

8 February 2020

cites work

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Topoisomerase I regulates open chromatin and controls gene expression in vivo

13 July 2018

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Histone H3 N-terminus regulates higher order structure of yeast heterochromatin

13 July 2018

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DNA topoisomerase II and its growing repertoire of biological functions.

13 July 2018

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A high-resolution atlas of nucleosome occupancy in yeast

13 July 2018

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Top1- and Top2-mediated topological transitions at replication forks ensure fork progression and stability and prevent DNA damage checkpoint activation

13 July 2018

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A genomic code for nucleosome positioning

13 July 2018

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A topoisomerase IIbeta-mediated dsDNA break required for regulated transcription.

13 July 2018

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Topoisomerase II, not topoisomerase I, is the proficient relaxase of nucleosomal DNA.

13 July 2018

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Genome-wide map of nucleosome acetylation and methylation in yeast

13 July 2018

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Topoisomerase II-DNA complexes trapped by ICRF-193 perturb chromatin structure.

13 July 2018

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Genome-scale identification of nucleosome positions in S. cerevisiae

13 July 2018

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Java Treeview--extensible visualization of microarray data

13 July 2018

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13 July 2018

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Elongation by RNA polymerase II on chromatin templates requires topoisomerase activity

13 July 2018

1 reference

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SWI/SNF unwraps, slides, and rewraps the nucleosome

13 July 2018

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Cellular roles of dna topoisomerases: a molecular perspective

13 July 2018

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The genome sequence of Schizosaccharomyces pombe

13 July 2018

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DNA topoisomerases: structure, function, and mechanism

13 July 2018

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Whole-genome expression analysis of snf/swi mutants of Saccharomyces cerevisiae

13 July 2018

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Dissecting the regulatory circuitry of a eukaryotic genome

13 July 2018

1 reference

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Topoisomerase function during replication-independent chromatin assembly in yeast

13 July 2018

1 reference

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Spreading of transcriptional repressor SIR3 from telomeric heterochromatin

13 July 2018

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Persistent site-specific remodeling of a nucleosome array by transient action of the SWI/SNF complex.

13 July 2018

1 reference

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Topoisomerase II does not play a scaffolding role in the organization of mitotic chromosomes assembled in Xenopus egg extracts

13 July 2018

1 reference

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Facilitated binding of TATA-binding protein to nucleosomal DNA

13 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3150916

DNA topoisomerase II mutant of Saccharomyces cerevisiae: topoisomerase II is required for segregation of daughter molecules at the termination of DNA replication

13 July 2018

1 reference

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Removal of positioned nucleosomes from the yeast PHO5 promoter upon PHO5 induction releases additional upstream activating DNA elements.

13 July 2018

1 reference

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Nucleosome loss activates yeast downstream promoters in vivo

13 July 2018

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Supercoiling of intracellular DNA can occur in eukaryotic cells.

13 July 2018

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Transcription generates positively and negatively supercoiled domains in the template.

13 July 2018

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Supercoiling of the DNA template during transcription

13 July 2018

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Evidence that SNF2/SWI2 and SNF5 activate transcription in yeast by altering chromatin structure

13 July 2018

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Genome-organizing factors Top2 and Hmo1 prevent chromosome fragility at sites of S phase transcription.

13 July 2018

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Global transcription regulation by DNA topoisomerase I in exponentially growing Saccharomyces cerevisiae cells: activation of telomere-proximal genes by TOP1 deletion

27 September 2018

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Chromatin immunoprecipitation for determining the association of proteins with specific genomic sequences in vivo

27 September 2018

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Evidence for nucleosome depletion at active regulatory regions genome-wide

27 September 2018

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Genomewide histone acetylation microarrays

27 September 2018

1 reference

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Histones are first hyperacetylated and then lose contact with the activated PHO5 promoter.

27 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3150916

Nucleosomes unfold completely at a transcriptionally active promoter.

27 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3150916

DNA topoisomerase IIalpha is required for RNA polymerase II transcription on chromatin templates

27 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3150916

Dynamics of Replication-Independent Histone Turnover in Budding Yeast

27 September 2018

1 reference

Crossref

https://api.crossref.org/works/10.1073%2FPNAS.1106834108

DNA topoisomerase II is required for condensation and separation of mitotic chromosomes in S. pombe

21 January 2018

1 reference

Crossref

https://api.crossref.org/works/10.1073%2FPNAS.1106834108

Need for DNA topoisomerase activity as a swivel for DNA replication for transcription of ribosomal RNA

21 January 2018

1 reference

Crossref

https://api.crossref.org/works/10.1073%2FPNAS.1106834108

Studies on rates of nucleosome formation with DNA under stress

21 January 2018

1 reference

12 December 2020

Topoisomerases and yeast rRNA transcription: negative supercoiling stimulates initiation and topoisomerase activity is required for elongation

1 reference

12 December 2020

Intrinsic histone-DNA interactions and low nucleosome density are important for preferential accessibility of promoter regions in yeast

1 reference

12 December 2020

SWI/SNF chromatin remodeling requires changes in DNA topology

1 reference

12 December 2020

Identifiers

DOI

10.1073/PNAS.1106834108

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:21771901%20AND%20SRC:MED&resulttype=core&format=json

8 February 2020

0 references

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:21771901%20AND%20SRC:MED&resulttype=core&format=json

8 February 2020

1 reference