Pumilio Puf domain RNA-binding proteins in Arabidopsis. (Q35124501)

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:21350339%20AND%20SRC:MED&resulttype=core&format=json

23 January 2020

review article

1 reference

title

Pumilio Puf domain RNA-binding proteins in Arabidopsis (English)

1 reference

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23 January 2020

2

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23 January 2020

author name string

Nazia Abbasi

series ordinal

1

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23 January 2020

Sang-Bong Choi

series ordinal

3

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23 January 2020

publication date

1 March 2011

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Plant Signaling and Behavior

23 January 2020

published in

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23 January 2020

volume

6

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23 January 2020

page(s)

364-368

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23 January 2020

issue

3

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https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:21350339%20AND%20SRC:MED&resulttype=core&format=json

APUM23, a nucleolar Puf domain protein, is involved in pre-ribosomal RNA processing and normal growth patterning in Arabidopsis

23 January 2020

cites work

1 reference

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Identifying eIF4E-binding protein translationally-controlled transcripts reveals links to mRNAs bound by specific PUF proteins

13 July 2018

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Identification of novel markers for stem-cell niche of Arabidopsis shoot apex

13 July 2018

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Translational repression by PUF proteins in vitro

13 July 2018

1 reference

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The Puf family of RNA-binding proteins in plants: phylogeny, structural modeling, activity and subcellular localization

13 July 2018

1 reference

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The trypanosome Pumilio-domain protein PUF7 associates with a nuclear cyclophilin and is involved in ribosomal RNA maturation

13 July 2018

1 reference

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Mammalian Pumilio 2 regulates dendrite morphogenesis and synaptic function

13 July 2018

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Pumilio 2 controls translation by competing with eIF4E for 7-methyl guanosine cap recognition

13 July 2018

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Structural basis for specific recognition of multiple mRNA targets by a PUF regulatory protein

13 July 2018

1 reference

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Molecular characterization of Arabidopsis thaliana PUF proteins--binding specificity and target candidates

13 July 2018

1 reference

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Comparative transcriptomics of Arabidopsis sperm cells.

13 July 2018

1 reference

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Translation of ASH1 mRNA is repressed by Puf6p-Fun12p/eIF5B interaction and released by CK2 phosphorylation

13 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3142416

Basis of altered RNA-binding specificity by PUF proteins revealed by crystal structures of yeast Puf4p

13 July 2018

1 reference

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Three PIGGYBACK genes that specifically influence leaf patterning encode ribosomal proteins

13 July 2018

1 reference

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A combinatorial code for CPE-mediated translational control

13 July 2018

1 reference

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Local regulation of mRNA translation: new insights from the bud.

13 July 2018

1 reference

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Puf1p acts in combination with other yeast Puf proteins to control mRNA stability

13 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3142416

Functional specificity among ribosomal proteins regulates gene expression

13 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3142416

Nop9 is an RNA binding protein present in pre-40S ribosomes and required for 18S rRNA synthesis in yeast

13 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3142416

An improved, bias-reduced probabilistic functional gene network of baker's yeast, Saccharomyces cerevisiae

13 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3142416

Sugar-inducible expression of the nucleolin-1 gene of Arabidopsis thaliana and its role in ribosome synthesis, growth and development

13 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3142416

Puf3p, a Pumilio family RNA binding protein, localizes to mitochondria and regulates mitochondrial biogenesis and motility in budding yeast

13 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3142416

Characterization of AtNUC-L1 reveals a central role of nucleolin in nucleolus organization and silencing of AtNUC-L2 gene in Arabidopsis

13 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3142416

Loc1p is required for efficient assembly and nuclear export of the 60S ribosomal subunit

13 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3142416

PUF proteins bind Pop2p to regulate messenger RNAs

13 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3142416

The Arabidopsis STV1 protein, responsible for translation reinitiation, is required for auxin-mediated gynoecium patterning

13 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3142416

A role for Jsn1p in recruiting the Arp2/3 complex to mitochondria in budding yeast

13 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3142416

A new yeast PUF family protein, Puf6p, represses ASH1 mRNA translation and is required for its localization

13 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3142416

Extensive association of functionally and cytotopically related mRNAs with Puf family RNA-binding proteins in yeast

13 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3142416

The PUF family of RNA-binding proteins: does evolutionarily conserved structure equal conserved function?

13 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3142416

Human Pumilio-2 is expressed in embryonic stem cells and germ cells and interacts with DAZ (Deleted in AZoospermia) and DAZ-like proteins

13 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3142416

60S pre-ribosome formation viewed from assembly in the nucleolus until export to the cytoplasm

13 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3142416

Modular recognition of RNA by a human pumilio-homology domain

13 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3142416

A conserved RNA-binding protein controls germline stem cells in Caenorhabditis elegans

13 July 2018

1 reference

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Genome analysis: RNA recognition motif (RRM) and K homology (KH) domain RNA-binding proteins from the flowering plant Arabidopsis thaliana

13 July 2018

1 reference

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Composition and functional characterization of yeast 66S ribosome assembly intermediates.

13 July 2018

1 reference

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Crystal structure of a Pumilio homology domain

13 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3142416

The joining of ribosomal subunits in eukaryotes requires eIF5B.

13 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3142416

Recruitment of Nanos to hunchback mRNA by Pumilio

13 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3142416

ChloroP, a neural network-based method for predicting chloroplast transit peptides and their cleavage sites

13 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3142416

PSORT: a program for detecting sorting signals in proteins and predicting their subcellular localization

13 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3142416

Nanos and Pumilio have critical roles in the development and function of Drosophila germline stem cells.

13 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3142416

An S18 ribosomal protein gene copy at the Arabidopsis PFL locus affects plant development by its specific expression in meristems.

13 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3142416

Binding of pumilio to maternal hunchback mRNA is required for posterior patterning in Drosophila embryos

13 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3142416

PUF protein-mediated deadenylation is catalyzed by Ccr4p.

13 July 2018

1 reference

https://api.crossref.org/works/10.4161%2FPSB.6.3.14380

The translational repressor Pumilio regulates presynaptic morphology and controls postsynaptic accumulation of translation factor eIF-4E.

21 January 2018

1 reference

https://api.crossref.org/works/10.4161%2FPSB.6.3.14380

Binding specificity and mRNA targets of a C. elegans PUF protein, FBF-1.

21 January 2018

1 reference

https://api.crossref.org/works/10.4161%2FPSB.6.3.14380

mRNA regulation by Puf domain proteins.

21 January 2018

1 reference

https://api.crossref.org/works/10.4161%2FPSB.6.3.14380

Arabidopsis nucleolin affects plant development and patterning.

21 January 2018

1 reference

https://api.crossref.org/works/10.4161%2FPSB.6.3.14380

Disruption of an Arabidopsis cytoplasmic ribosomal protein S13-homologous gene by transposon-mediated mutagenesis causes aberrant growth and development.

21 January 2018

1 reference

https://api.crossref.org/works/10.4161%2FPSB.6.3.14380

Ribosomal proteins promote leaf adaxial identity.

21 January 2018

1 reference

https://api.crossref.org/works/10.4161%2FPSB.6.3.14380

Analysis of ABA hypersensitive germination2 revealed the pivotal functions of PARN in stress response in Arabidopsis.

21 January 2018

1 reference

https://api.crossref.org/works/10.4161%2FPSB.6.3.14380

Auxin-mediated ribosomal biogenesis regulates vacuolar trafficking in Arabidopsis

21 January 2018

1 reference

https://api.crossref.org/works/10.4161%2FPSB.6.3.14380

An Arabidopsis Minute-like phenotype caused by a semi-dominant mutation in a RIBOSOMAL PROTEIN S5 gene.

21 January 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3142416

Arabidopsis ribosomal proteins RPL23aA and RPL23aB are differentially targeted to the nucleolus and are disparately required for normal development

27 September 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/21350339

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Two yeast PUF proteins negatively regulate a single mRNA

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/21350339

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Identifiers

DOI

10.4161/PSB.6.3.14380

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:21350339%20AND%20SRC:MED&resulttype=core&format=json

23 January 2020

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:21350339%20AND%20SRC:MED&resulttype=core&format=json

23 January 2020

1 reference