RNA polymerase holoenzyme: structure, function and biological implications (Q35121887)

6 August 2017

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title

RNA polymerase holoenzyme: structure, function and biological implications (English)

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6 August 2017

2

Evgeny Nudler

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author name string

Sergei Borukhov

series ordinal

1

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6 August 2017

1 April 2003

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Current Opinion in Microbiology

6 August 2017

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6 August 2017

6

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6 August 2017

93-100

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6 August 2017

2

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Prokaryotic and eukaryotic RNA polymerases have homologous core subunits

6 August 2017

1 reference

https://api.crossref.org/works/10.1016%2FS1369-5274%2803%2900036-5

7 January 2021

RNA polymerase: structural similarities between bacterial RNA polymerase and eukaryotic RNA polymerase II.

1 reference

https://api.crossref.org/works/10.1016%2FS1369-5274%2803%2900036-5

7 January 2021

Bacterial RNA polymerase

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https://api.crossref.org/works/10.1016%2FS1369-5274%2803%2900036-5

7 January 2021

Factor Stimulating Transcription by RNA Polymerase

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https://api.crossref.org/works/10.1016%2FS1369-5274%2803%2900036-5

7 January 2021

The functional and regulatory roles of sigma factors in transcription

1 reference

https://api.crossref.org/works/10.1016%2FS1369-5274%2803%2900036-5

7 January 2021

An integrated model of the transcription complex in elongation, termination, and editing.

1 reference

https://api.crossref.org/works/10.1016%2FS1369-5274%2803%2900036-5

7 January 2021

DNA footprints of the two kinetically significant intermediates in formation of an RNA polymerase-promoter open complex: evidence that interactions with start site and downstream DNA induce sequential conformational changes in polymerase and DNA.

1 reference

https://api.crossref.org/works/10.1016%2FS1369-5274%2803%2900036-5

7 January 2021

The sigma 70 family: sequence conservation and evolutionary relationships

1 reference

https://api.crossref.org/works/10.1016%2FS1369-5274%2803%2900036-5

7 January 2021

Eubacterial sigma-factors

1 reference

https://api.crossref.org/works/10.1016%2FS1369-5274%2803%2900036-5

7 January 2021

Functional modulation of Escherichia coli RNA polymerase

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https://api.crossref.org/works/10.1016%2FS1369-5274%2803%2900036-5

7 January 2021

The Minimal Gene Complement of Mycoplasma genitalium

1 reference

https://api.crossref.org/works/10.1016%2FS1369-5274%2803%2900036-5

7 January 2021

Complete genome sequence of the model actinomycete Streptomyces coelicolor A3(2)

1 reference

https://api.crossref.org/works/10.1016%2FS1369-5274%2803%2900036-5

7 January 2021

Competition among seven Escherichia coli sigma subunits: relative binding affinities to the core RNA polymerase

1 reference

https://api.crossref.org/works/10.1016%2FS1369-5274%2803%2900036-5

7 January 2021

Region 2.5 of the Escherichia coli RNA polymerase sigma70 subunit is responsible for the recognition of the 'extended-10' motif at promoters

1 reference

https://api.crossref.org/works/10.1016%2FS1369-5274%2803%2900036-5

7 January 2021

Polypeptides containing highly conserved regions of transcription initiation factor σ70 exhibit specificity of binding to promoter DNA

1 reference

https://api.crossref.org/works/10.1016%2FS1369-5274%2803%2900036-5

7 January 2021

Promoter recognition and discrimination by EsigmaS RNA polymerase

1 reference

https://api.crossref.org/works/10.1016%2FS1369-5274%2803%2900036-5

7 January 2021

Different roles for basic and aromatic amino acids in conserved region 2 of Escherichia coli sigma(70) in the nucleation and maintenance of the single-stranded DNA bubble in open RNA polymerase-promoter complexes

1 reference

https://api.crossref.org/works/10.1016%2FS1369-5274%2803%2900036-5

7 January 2021

Base-specific recognition of the nontemplate strand of promoter DNA by E. coli RNA polymerase

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https://api.crossref.org/works/10.1016%2FS1369-5274%2803%2900036-5

7 January 2021

sigma factor mutations affecting the sequence-selective interaction of RNA polymerase with -10 region single-stranded DNA

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https://api.crossref.org/works/10.1016%2FS1369-5274%2803%2900036-5

7 January 2021

Promoter recognition as measured by binding of polymerase to nontemplate strand oligonucleotide

1 reference

https://api.crossref.org/works/10.1016%2FS1369-5274%2803%2900036-5

7 January 2021

Escherichia coli promoter opening and -10 recognition: mutational analysis of sigma70.

1 reference

https://api.crossref.org/works/10.1016%2FS1369-5274%2803%2900036-5

7 January 2021

Multiple regions on the Escherichia coli heat shock transcription factor sigma32 determine core RNA polymerase binding specificity

1 reference

https://api.crossref.org/works/10.1016%2FS1369-5274%2803%2900036-5

7 January 2021

Mapping the sigma70 subunit contact sites on Escherichia coli RNA polymerase with a sigma70-conjugated chemical protease

1 reference

https://api.crossref.org/works/10.1016%2FS1369-5274%2803%2900036-5

7 January 2021

The interface of sigma with core RNA polymerase is extensive, conserved, and functionally specialized

1 reference

https://api.crossref.org/works/10.1016%2FS1369-5274%2803%2900036-5

7 January 2021

Binding of the initiation factor sigma(70) to core RNA polymerase is a multistep process

1 reference

https://api.crossref.org/works/10.1016%2FS1369-5274%2803%2900036-5

7 January 2021

Crystal structure of Thermus aquaticus core RNA polymerase at 3.3 A resolution.

1 reference

https://api.crossref.org/works/10.1016%2FS1369-5274%2803%2900036-5

7 January 2021

Structural mechanism for rifampicin inhibition of bacterial rna polymerase

1 reference

https://api.crossref.org/works/10.1016%2FS1369-5274%2803%2900036-5

7 January 2021

Structure of the bacterial RNA polymerase promoter specificity sigma subunit

1 reference

https://api.crossref.org/works/10.1016%2FS1369-5274%2803%2900036-5

7 January 2021

Structural basis of transcription initiation: an RNA polymerase holoenzyme-DNA complex

1 reference

https://api.crossref.org/works/10.1016%2FS1369-5274%2803%2900036-5

7 January 2021

Structural basis of transcription initiation: RNA polymerase holoenzyme at 4 A resolution

1 reference

https://api.crossref.org/works/10.1016%2FS1369-5274%2803%2900036-5

7 January 2021

Structural basis of transcription: RNA polymerase II at 2.8 angstrom resolution

1 reference

https://api.crossref.org/works/10.1016%2FS1369-5274%2803%2900036-5

7 January 2021

Structural basis of transcription: an RNA polymerase II elongation complex at 3.3 A resolution

1 reference

https://api.crossref.org/works/10.1016%2FS1369-5274%2803%2900036-5

7 January 2021

Crystal structure of a bacterial RNA polymerase holoenzyme at 2.6 A resolution

1 reference

https://api.crossref.org/works/10.1016%2FS1369-5274%2803%2900036-5

7 January 2021

Structural basis of transcription activation: the CAP-alpha CTD-DNA complex

1 reference

https://api.crossref.org/works/10.1016%2FS1369-5274%2803%2900036-5

7 January 2021

A structural model of transcription elongation

1 reference

https://api.crossref.org/works/10.1016%2FS1369-5274%2803%2900036-5

7 January 2021

The orientation of DNA in an archaeal transcription initiation complex

1 reference

https://api.crossref.org/works/10.1016%2FS1369-5274%2803%2900036-5

7 January 2021

Structural organization of the RNA polymerase-promoter open complex

1 reference

https://api.crossref.org/works/10.1016%2FS1369-5274%2803%2900036-5

7 January 2021

A coiled-coil from the RNA polymerase beta' subunit allosterically induces selective nontemplate strand binding by sigma(70).

1 reference

https://api.crossref.org/works/10.1016%2FS1369-5274%2803%2900036-5

7 January 2021

A "master" in base unpairing during isomerization of a promoter upon RNA polymerase binding.

1 reference

https://api.crossref.org/works/10.1016%2FS1369-5274%2803%2900036-5

7 January 2021

Structural organization of bacterial RNA polymerase holoenzyme and the RNA polymerase-promoter open complex

1 reference

https://api.crossref.org/works/10.1016%2FS1369-5274%2803%2900036-5

7 January 2021

Translocation of sigma(70) with RNA polymerase during transcription: fluorescence resonance energy transfer assay for movement relative to DNA.

1 reference

https://api.crossref.org/works/10.1016%2FS1369-5274%2803%2900036-5

7 January 2021

Structure-based analysis of RNA polymerase function: the largest subunit's rudder contributes critically to elongation complex stability and is not involved in the maintenance of RNA-DNA hybrid length

1 reference

https://api.crossref.org/works/10.1016%2FS1369-5274%2803%2900036-5

7 January 2021

A role for interaction of the RNA polymerase flap domain with the sigma subunit in promoter recognition.

1 reference

https://api.crossref.org/works/10.1016%2FS1369-5274%2803%2900036-5

7 January 2021

Region 1 of sigma70 is required for efficient isomerization and initiation of transcription by Escherichia coli RNA polymerase

1 reference

https://api.crossref.org/works/10.1016%2FS1369-5274%2803%2900036-5

7 January 2021

A mutation in region 1.1 of sigma70 affects promoter DNA binding by Escherichia coli RNA polymerase holoenzyme

1 reference

https://api.crossref.org/works/10.1016%2FS1369-5274%2803%2900036-5

7 January 2021

Mapping protein-protein interaction domains using ordered fragment ladder far-western analysis of hexahistidine-tagged fusion proteins

1 reference

https://api.crossref.org/works/10.1016%2FS1369-5274%2803%2900036-5

7 January 2021

How sigma docks to RNA polymerase and what sigma does

1 reference

https://api.crossref.org/works/10.1016%2FS1369-5274%2803%2900036-5

7 January 2021

Core RNA polymerase from E. coli induces a major change in the domain arrangement of the sigma 70 subunit

1 reference

https://api.crossref.org/works/10.1016%2FS1369-5274%2803%2900036-5

7 January 2021

Role of the RNA polymerase sigma subunit in transcription initiation

1 reference

https://api.crossref.org/works/10.1016%2FS1369-5274%2803%2900036-5

7 January 2021

Mutational analysis of beta '260-309, a sigma 70 binding site located on Escherichia coli core RNA polymerase.

1 reference

https://api.crossref.org/works/10.1016%2FS1369-5274%2803%2900036-5

7 January 2021

A single amino acid substitution in sigma E affects its ability to bind core RNA polymerase

1 reference

https://api.crossref.org/works/10.1016%2FS1369-5274%2803%2900036-5

7 January 2021

Low concentrations of free hydrophobic amino acids disrupt the Escherichia coli RNA polymerase core-sigma(70) protein-protein interaction

1 reference

https://api.crossref.org/works/10.1016%2FS1369-5274%2803%2900036-5

7 January 2021

Identification of the Helicobacter pylori anti-sigma28 factor

1 reference

https://api.crossref.org/works/10.1016%2FS1369-5274%2803%2900036-5

7 January 2021

Function of E. coli RNA polymerase sigma factor sigma 70 in promoter-proximal pausing

1 reference

https://api.crossref.org/works/10.1016%2FS1369-5274%2803%2900036-5

7 January 2021

Isolation and characterization of sigma(70)-retaining transcription elongation complexes from Escherichia coli

1 reference

https://api.crossref.org/works/10.1016%2FS1369-5274%2803%2900036-5

7 January 2021

10.1016/S1369-5274(03)00036-5

Identifiers

DOI

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6 August 2017

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PubMed ID

12732296