Ecological modeling from time-series inference: insight into dynamics and stability of intestinal microbiota (Q35069150)

6 August 2017

title

Ecological modeling from time-series inference: insight into dynamics and stability of intestinal microbiota (English)

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6 August 2017

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2

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Gunnar Rätsch

5

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Chris Sander

7

object named as

Chris Sander

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6 August 2017

6

Eric G Pamer

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6 August 2017

Richard R Stein

1

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6 August 2017

Nora C Toussaint

3

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6 August 2017

Charlie G Buffie

4

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6 August 2017

João B Xavier

8

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6 August 2017

publication date

12 December 2013

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PLOS Computational Biology

6 August 2017

published in

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6 August 2017

volume

9

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6 August 2017

issue

12

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6 August 2017

page(s)

e1003388

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Creative Commons Attribution 4.0 International

6 August 2017

copyright license

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maintained by WikiProject

1 reference

Computational meta'omics for microbial community studies

1 reference

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Disruption of the gut microbiome as a risk factor for microbial infections

8 July 2018

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Duodenal infusion of donor feces for recurrent Clostridium difficile

8 July 2018

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Intestinal microbiota containing Barnesiella species cures vancomycin-resistant Enterococcus faecium colonization.

8 July 2018

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Fundamentals of microbial community resistance and resilience

8 July 2018

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Efficient statistical significance approximation for local similarity analysis of high-throughput time series data

8 July 2018

1 reference

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Inferring correlation networks from genomic survey data

8 July 2018

1 reference

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Dysfunction of the intestinal microbiome in inflammatory bowel disease and treatment

8 July 2018

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Diversity, stability and resilience of the human gut microbiota

8 July 2018

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Inferring dynamic signatures of microbes in complex host ecosystems

8 July 2018

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The human microbiome: ecosystem resilience and health

8 July 2018

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Microbial co-occurrence relationships in the human microbiome

8 July 2018

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Microbial interactions: from networks to models

8 July 2018

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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3861043

Extended local similarity analysis (eLSA) of microbial community and other time series data with replicates

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3861043

Intestinal domination and the risk of bacteremia in patients undergoing allogeneic hematopoietic stem cell transplantation

8 July 2018

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The human gut microbiome: current knowledge, challenges, and future directions

8 July 2018

1 reference

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Generic indicators for loss of resilience before a tipping point leading to population collapse

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3861043

Social interaction, noise and antibiotic-mediated switches in the intestinal microbiota

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3861043

The impact of the gut microbiota on human health: an integrative view

8 July 2018

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The human microbiome: at the interface of health and disease

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3861043

Detecting novel associations in large data sets

8 July 2018

1 reference

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The evolution of bacteriocin production in bacterial biofilms

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3861043

The Western English Channel contains a persistent microbial seed bank

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3861043

Profound alterations of intestinal microbiota following a single dose of clindamycin results in sustained susceptibility to Clostridium difficile-induced colitis

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3861043

Obesity and the gut microbiota

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3861043

Treating Clostridium difficile infection with fecal microbiota transplantation

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3861043

Soil microbial community successional patterns during forest ecosystem restoration.

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3861043

Metagenomic biomarker discovery and explanation

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3861043

Moving pictures of the human microbiome

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3861043

Enterotypes of the human gut microbiome

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3861043

Microbiota regulates immune defense against respiratory tract influenza A virus infection

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3861043

Bacterial community structures are unique and resilient in full-scale bioenergy systems

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3861043

Vancomycin-resistant Enterococcus domination of intestinal microbiota is enabled by antibiotic treatment in mice and precedes bloodstream invasion in humans.

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3861043

Incomplete recovery and individualized responses of the human distal gut microbiota to repeated antibiotic perturbation

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3861043

Dominant and diet-responsive groups of bacteria within the human colonic microbiota

8 July 2018

1 reference

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Vaginal microbiome of reproductive-age women

8 July 2018

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Gut microbiota in human adults with type 2 diabetes differs from non-diabetic adults

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3861043

Like will to like: abundances of closely related species can predict susceptibility to intestinal colonization by pathogenic and commensal bacteria

8 July 2018

1 reference

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Colloquium paper: resistance, resilience, and redundancy in microbial communities

8 July 2018

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Microbial interactions within a cheese microbial community.

8 July 2018

1 reference

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The human microbiome project

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3861043

The Inferelator: an algorithm for learning parsimonious regulatory networks from systems-biology data sets de novo

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3861043

Inference of gene regulatory networks and compound mode of action from time course gene expression profiles

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3861043

Diversity of the human intestinal microbial flora

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3861043

RESISTANCE OF THE MOUSE'S INTESTINAL TRACT TO EXPERIMENTAL SALMONELLA INFECTION. I. FACTORS WHICH INTERFERE WITH THE INITIATION OF INFECTION BY ORAL INOCULATION

8 July 2018

1 reference

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Inferring genetic networks and identifying compound mode of action via expression profiling

8 July 2018

1 reference

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Antecedent treatment with different antibiotic agents as a risk factor for vancomycin-resistant Enterococcus

8 July 2018

1 reference

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Reverse engineering gene networks using singular value decomposition and robust regression

8 July 2018

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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3861043

Using density rather than mass to express the concentration of gastrointestinal tract constituents.

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3861043

The microbiome explored: recent insights and future challenges

8 July 2018

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Long-term ecological impacts of antibiotic administration on the human intestinal microbiota

27 September 2018

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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3861043

27 September 2018

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In vivo and in vitro antagonism of intestinal bacteria against Shigellaflexneri. II. The inhibitory mechanism

27 September 2018

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Colonization and Infection With Multiple Nosocomial Pathogens Among Patients Colonized With Vancomycin-ResistantEnterococcus

27 September 2018

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Community ecology theory as a framework for biological invasions

27 September 2018

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On the Evidence Needed to Judge Ecological Stability or Persistence

21 January 2018

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The antimicrobial action of chitosan, low molar mass chitosan, and chitooligosaccharides on human colonic bacteria

21 January 2018

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PubMed

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inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Identifiers

DOI

10.1371/JOURNAL.PCBI.1003388

1 reference

journals/ploscb/SteinBTBRPSX13

6 August 2017

DBLP publication ID

1 reference

DBLP Dataset 2021-01-02

28 January 2021

1 reference

6 August 2017

1 reference