A platform independent RNA-Seq protocol for the detection of transcriptome complexity (Q35059540)

6 August 2017

A platform independent RNA-Seq protocol for the detection of transcriptome complexity (English)

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6 August 2017

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16

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Mariano Francesco Caratozzolo

6 August 2017

Flaviana Marzano

6

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Mariano Francesco Caratozzolo

5

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Ivana Kurelac

Ivana Kurelac

7

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Domenica D'Elia

Domenica D'Elia

9

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Anna Maria D'Erchia

Anna Maria D'Erchia

8

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Flavio Licciulli

Flavio Licciulli

10

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Ernesto Picardi

Ernesto Picardi

12

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Caterina Manzari

3

Caterina Manzari

1 reference

6 August 2017

Claudia Calabrese

1

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6 August 2017

Marina Mangiulli

2

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6 August 2017

Anna Maria Paluscio

4

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6 August 2017

Sabino Liuni

11

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6 August 2017

Marcella Attimonelli

13

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6 August 2017

Giuseppe Gasparre

14

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6 August 2017

Anna Maria Porcelli

15

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6 August 2017

Elisabetta Sbisà

17

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6 August 2017

Apollonia Tullo

18

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6 August 2017

language of work or name

English

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publication date

5 December 2013

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6 August 2017

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6 August 2017

14

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6 August 2017

855

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describes a project that uses

6 August 2017

edgeR

edgeR Bioconductor

edgeR

1 reference

CZ Software Mentions: A large dataset of software mentions in the biomedical literature

edgeR

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cites work

NGS-Trex: Next Generation Sequencing Transcriptome profile explorer

1 reference

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The expanding scope of DNA sequencing

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4046740

An integrated encyclopedia of DNA elements in the human genome

8 July 2018

1 reference

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Identification of novel transcripts deregulated in buccal cancer by RNA-seq.

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4046740

Comparison of next-generation sequencing systems

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4046740

Global patterns of tissue-specific alternative polyadenylation in Drosophila

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4046740

Combined deep microRNA and mRNA sequencing identifies protective transcriptomal signature of enhanced PI3Kα signaling in cardiac hypertrophy.

8 July 2018

1 reference

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Next-generation sequencing technologies for environmental DNA research

8 July 2018

1 reference

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Deep sequencing for the detection of virus-like sequences in the brains of patients with multiple sclerosis: detection of GBV-C in human brain

8 July 2018

1 reference

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How to analyze gene expression using RNA-sequencing data

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4046740

microRNA expression profiling in fetal single ventricle malformation identified by deep sequencing

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4046740

A mutation threshold distinguishes the antitumorigenic effects of the mitochondrial gene MTND1, an oncojanus function.

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4046740

Analysis of transcript and protein overlap in a human osteosarcoma cell line

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4046740

Identification of tumor-associated cassette exons in human cancer through EST-based computational prediction and experimental validation

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4046740

Differentially expressed alternatively spliced genes in malignant pleural mesothelioma identified using massively parallel transcriptome sequencing

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4046740

The genetic and metabolic signature of oncocytic transformation implicates HIF1alpha destabilization

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4046740

edgeR: a Bioconductor package for differential expression analysis of digital gene expression data

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4046740

Whole genome transcriptome analysis.

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4046740

Bioinformatics approaches for genomics and post genomics applications of next-generation sequencing

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4046740

Achievements and new knowledge unraveled by metagenomic approaches

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4046740

Amplification-free Illumina sequencing-library preparation facilitates improved mapping and assembly of (G+C)-biased genomes

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4046740

Metabolism and regulation of canonical histone mRNAs: life without a poly(A) tail

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4046740

MetaSim: a sequencing simulator for genomics and metagenomics

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4046740

Poly A- transcripts expressed in HeLa cells

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4046740

Mapping and quantifying mammalian transcriptomes by RNA-Seq

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4046740

Mechanism of chimera formation during the Multiple Displacement Amplification reaction

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4046740

Defective oxidative phosphorylation in thyroid oncocytic carcinoma is associated with pathogenic mitochondrial DNA mutations affecting complexes I and III.

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4046740

Sequencing genomes from single cells by polymerase cloning

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4046740

A specific subdomain in phi29 DNA polymerase confers both processivity and strand-displacement capacity

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4046740

GMAP: a genomic mapping and alignment program for mRNA and EST sequences

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4046740

An important role for RNase R in mRNA decay

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4046740

Genome coverage and sequence fidelity of phi29 polymerase-based multiple strand displacement whole genome amplification

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4046740

Mfold web server for nucleic acid folding and hybridization prediction

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4046740

Rapid amplification of plasmid and phage DNA using Phi 29 DNA polymerase and multiply-primed rolling circle amplification

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4046740

Primer3 on the WWW for general users and for biologist programmers

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4046740

8 July 2018

Identifiers

DOI

10.1186/1471-2164-14-855

1 reference

release_ahtd2mrpivesriceln6ykv6rvy

6 August 2017

1 reference

Fatcat

https://api.fatcat.wiki/v0/release/ahtd2mrpivesriceln6ykv6rvy

mapped directly with Wikidata item

24 November 2022

based on heuristic

PMCID

4046740

1 reference

6 August 2017

1 reference