Analyses of subnanometer resolution cryo-EM density maps (Q35023149)

5 August 2017

title

Analyses of subnanometer resolution cryo-EM density maps (English)

1 reference

cryogenic electron microscopy

5 August 2017

main subject

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author name string

Matthew L Baker

1

1 reference

5 August 2017

Mariah R Baker

2

1 reference

5 August 2017

Corey F Hryc

3

1 reference

5 August 2017

Frank Dimaio

4

1 reference

5 August 2017

language of work or name

English

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publication date

1 January 2010

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5 August 2017

published in

Methods in Enzymology

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5 August 2017

volume

483

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5 August 2017

page(s)

1-29

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Single particle analysis at high resolution

5 August 2017

cites work

1 reference

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8 July 2018

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4.0-A resolution cryo-EM structure of the mammalian chaperonin TRiC/CCT reveals its unique subunit arrangement

8 July 2018

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Building and refining protein models within cryo-electron microscopy density maps based on homology modeling and multiscale structure refinement

8 July 2018

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8 July 2018

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Refinement of protein structures into low-resolution density maps using rosetta

8 July 2018

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8 July 2018

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Rotavirus architecture at subnanometer resolution

8 July 2018

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8 July 2018

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8 July 2018

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8 July 2018

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8 July 2018

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8 July 2018

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8 July 2018

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8 July 2018

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3.88 Å structure of cytoplasmic polyhedrosis virus by cryo-electron microscopy

8 July 2018

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De novo backbone trace of GroEL from single particle electron cryomicroscopy

8 July 2018

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Backbone structure of the infectious epsilon15 virus capsid revealed by electron cryomicroscopy

8 July 2018

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Protein structure fitting and refinement guided by cryo-EM density

8 July 2018

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Near-atomic resolution using electron cryomicroscopy and single-particle reconstruction

8 July 2018

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Combining efficient conformational sampling with a deformable elastic network model facilitates structure refinement at low resolution

8 July 2018

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Identification of secondary structure elements in intermediate-resolution density maps

8 July 2018

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Ab initio modeling of the herpesvirus VP26 core domain assessed by CryoEM density

8 July 2018

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8 July 2018

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SABBAC: online Structural Alphabet-based protein BackBone reconstruction from Alpha-Carbon trace.

8 July 2018

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Refinement of protein structures by iterative comparative modeling and CryoEM density fitting

8 July 2018

1 reference

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Lipid-protein interactions in double-layered two-dimensional AQP0 crystals

8 July 2018

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8 July 2018

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Common ancestry of herpesviruses and tailed DNA bacteriophages

8 July 2018

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8 July 2018

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The pore structure of the closed RyR1 channel

8 July 2018

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Electron cryomicroscopy of biological machines at subnanometer resolution

8 July 2018

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8 July 2018

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Structural characterization of components of protein assemblies by comparative modeling and electron cryo-microscopy.

8 July 2018

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Structure of Ca2+ release channel at 14 A resolution

8 July 2018

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8 July 2018

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Normal mode based flexible fitting of high-resolution structure into low-resolution experimental data from cryo-EM.

8 July 2018

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8 July 2018

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A Structural-informatics approach for tracing beta-sheets: building pseudo-C(alpha) traces for beta-strands in intermediate-resolution density maps

8 July 2018

1 reference

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Crystal structures of the group II chaperonin from Thermococcus strain KS-1: steric hindrance by the substituted amino acid, and inter-subunit rearrangement between two crystal forms

8 July 2018

1 reference

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The atomic structure of rice dwarf virus reveals the self-assembly mechanism of component proteins

8 July 2018

1 reference

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A structural-informatics approach for mining beta-sheets: locating sheets in intermediate-resolution density maps

8 July 2018

1 reference

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3D-Jury: a simple approach to improve protein structure predictions

8 July 2018

1 reference

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Single-particle imaging of macromolecules by cryo-electron microscopy

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3107677

Improving the prediction of protein secondary structure in three and eight classes using recurrent neural networks and profiles.

8 July 2018

1 reference

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Enhancement of protein modeling by human intervention in applying the automatic programs 3D-JIGSAW and 3D-PSSM.

8 July 2018

1 reference

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FUGUE: sequence-structure homology recognition using environment-specific substitution tables and structure-dependent gap penalties

8 July 2018

1 reference

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Bridging the information gap: computational tools for intermediate resolution structure interpretation

8 July 2018

1 reference

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Macromolecular electron microscopy in the era of structural genomics

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3107677

Docking structures of domains into maps from cryo-electron microscopy using local correlation

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3107677

The PSIPRED protein structure prediction server

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3107677

EMAN: semiautomated software for high-resolution single-particle reconstructions

8 July 2018

1 reference

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The crystal structure of the human hepatitis B virus capsid

8 July 2018

1 reference

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Situs: A package for docking crystal structures into low-resolution maps from electron microscopy

8 July 2018

1 reference

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Surface of bacteriorhodopsin revealed by high-resolution electron crystallography

8 July 2018

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Visualization of a 4-helix bundle in the hepatitis B virus capsid by cryo-electron microscopy.

8 July 2018

1 reference

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Determination of the fold of the core protein of hepatitis B virus by electron cryomicroscopy

8 July 2018

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8 July 2018

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Evaluation of comparative protein modeling by MODELLER

8 July 2018

1 reference

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Comparison of spatial arrangements of secondary structural elements in proteins.

8 July 2018

1 reference

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Rapid and sensitive protein similarity searches

8 July 2018

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Model for the structure of bacteriorhodopsin based on high-resolution electron cryo-microscopy

8 July 2018

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Basic local alignment search tool

8 July 2018

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Improved methods for building protein models in electron density maps and the location of errors in these models

8 July 2018

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Confidence intervals for fitting of atomic models into low-resolution densities

8 July 2018

1 reference

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UROX 2.0: an interactive tool for fitting atomic models into electron-microscopy reconstructions

25 October 2018

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Sharpening high resolution information in single particle electron cryomicroscopy

25 October 2018

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NORMA: a tool for flexible fitting of high-resolution protein structures into low-resolution electron-microscopy-derived density maps.

25 October 2018

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Automated segmentation of molecular subunits in electron cryomicroscopy density maps.

25 October 2018

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Architecture of the herpes simplex virus major capsid protein derived from structural bioinformatics

25 October 2018

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A novel three-dimensional variant of the watershed transform for segmentation of electron density maps

25 October 2018

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Electron cryomicroscopy and bioinformatics suggest protein fold models for rice dwarf virus

25 October 2018

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25 October 2018

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Quantitative fitting of atomic models into observed densities derived by electron microscopy.

25 October 2018

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Three-dimensional model of purple membrane obtained by electron microscopy

25 October 2018

1 reference

Crossref

https://api.crossref.org/works/10.1016%2FS0076-6879%2810%2983001-0

inferred from DOI database lookup

7 January 2021

based on heuristic

Identifiers

DOI

10.1016/S0076-6879(10)83001-0

1 reference

5 August 2017

1 reference

5 August 2017

1 reference