Quantitative analysis of a deeply sequenced marine microbial metatranscriptome (Q35018732)

5 August 2017

Quantitative analysis of a deeply sequenced marine microbial metatranscriptome (English)

1 reference

5 August 2017

Johanna M Rinta-Kanto

object named as

Johanna M Rinta-Kanto

3

0 references

Mary Ann Moran

object named as

Mary Ann Moran

4

0 references

author name string

Scott M Gifford

1

1 reference

PubMed ID

20844569

5 August 2017

Shalabh Sharma

2

1 reference

5 August 2017

16 September 2010

1 reference

5 August 2017

1 reference

5 August 2017

5

1 reference

5 August 2017

461-472

1 reference

5 August 2017

3

1 reference

https://scigraph.springernature.com/pub.10.1038/ismej.2010.141

5 August 2017

0 references

cites work

Metatranscriptomic analysis of ammonia-oxidizing organisms in an estuarine bacterioplankton assemblage.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3105723

Development and quantitative analyses of a universal rRNA-subtraction protocol for microbial metatranscriptomics

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3105723

A scaling normalization method for differential expression analysis of RNA-seq data

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3105723

Abundances of crenarchaeal amoA genes and transcripts in the Pacific Ocean

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3105723

Deep sequencing of a dimethylsulfoniopropionate-degrading gene (dmdA) by using PCR primer pairs designed on the basis of marine metagenomic data

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3105723

Transporter genes expressed by coastal bacterioplankton in response to dissolved organic carbon

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3105723

Microbial community gene expression within colonies of the diazotroph, Trichodesmium, from the Southwest Pacific Ocean

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3105723

Metatranscriptomics reveals unique microbial small RNAs in the ocean's water column

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3105723

Statistical methods for detecting differentially abundant features in clinical metagenomic samples

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3105723

Structure and complexity of a bacterial transcriptome.

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3105723

Analyzing gene expression from marine microbial communities using environmental transcriptomics

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3105723

In situ transcriptomic analysis of the globally important keystone N2-fixing taxon Crocosphaera watsonii.

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3105723

Comparative day/night metatranscriptomic analysis of microbial communities in the North Pacific subtropical gyre

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3105723

Detection of large numbers of novel sequences in the metatranscriptomes of complex marine microbial communities

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3105723

A unified approach to false discovery rate estimation

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3105723

Simultaneous assessment of soil microbial community structure and function through analysis of the meta-transcriptome

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3105723

Functional metagenomic profiling of nine biomes

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3105723

Microbial community gene expression in ocean surface waters

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3105723

Abundant proteorhodopsin genes in the North Atlantic Ocean

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3105723

Transcriptional response of Silicibacter pomeroyi DSS-3 to dimethylsulfoniopropionate (DMSP).

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3105723

The Sorcerer II Global Ocean Sampling expedition: northwest Atlantic through eastern tropical Pacific

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3105723

An application of statistics to comparative metagenomics

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3105723

Genome sequencing in microfabricated high-density picolitre reactors

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3105723

Analysis of microbial gene transcripts in environmental samples

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3105723

Cultivation and growth characteristics of a diverse group of oligotrophic marine Gammaproteobacteria

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3105723

The COG database: an updated version includes eukaryotes

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3105723

Monitoring global messenger RNA changes in externally controlled microarray experiments.

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3105723

Systematic artifacts in metagenomes from complex microbial communities.

8 July 2018

1 reference

Crossref

https://api.crossref.org/works/10.1038%2FISMEJ.2010.141

Global mRNA changes in microarray experiments

21 January 2018

1 reference

Crossref

https://api.crossref.org/works/10.1038%2FISMEJ.2010.141

Seasonal Changes in Microbial Processes in Estuarine and Continental Shelf Waters of the South-eastern U.S.A

21 January 2018

1 reference

Crossref

https://api.crossref.org/works/10.1038%2FISMEJ.2010.141

Average gene length is highly conserved in prokaryotes and eukaryotes and diverges only between the two kingdoms

21 January 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/20844569

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Microbial transformations of methylated sulfur compounds in anoxic salt marsh sediments

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/20844569

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Identifiers

DOI

10.1038/ISMEJ.2010.141

1 reference

5 August 2017

1 reference

5 August 2017

1 reference

PubMed ID

20844569