Sequence analysis of multidomain proteins: past perspectives and future directions (Q35014302)

5 August 2017

1 reference

title

Sequence analysis of multidomain proteins: past perspectives and future directions (English)

1 reference

5 August 2017

2

1 reference

5 August 2017

4

1 reference

5 August 2017

3

Jörg Schultz

1 reference

5 August 2017

Richard R Copley

1

1 reference

5 August 2017

publication date

1 January 2002

1 reference

Advances in Protein Chemistry

5 August 2017

published in

1 reference

5 August 2017

volume

61

1 reference

5 August 2017

page(s)

75-98

1 reference

The genome sequence of Drosophila melanogaster

5 August 2017

cites work

1 reference

https://api.crossref.org/works/10.1016%2FS0065-3233%2802%2961002-2

7 January 2021

Toll-like receptors in the induction of the innate immune response

1 reference

https://api.crossref.org/works/10.1016%2FS0065-3233%2802%2961002-2

7 January 2021

Evidence for a clade of nematodes, arthropods and other moulting animals

1 reference

https://api.crossref.org/works/10.1016%2FS0065-3233%2802%2961002-2

7 January 2021

Local alignment statistics

1 reference

https://api.crossref.org/works/10.1016%2FS0065-3233%2802%2961002-2

7 January 2021

Gapped BLAST and PSI-BLAST: a new generation of protein database search programs

1 reference

https://api.crossref.org/works/10.1016%2FS0065-3233%2802%2961002-2

7 January 2021

Homology-based method for identification of protein repeats using statistical significance estimates.

1 reference

https://api.crossref.org/works/10.1016%2FS0065-3233%2802%2961002-2

7 January 2021

The domains of death: evolution of the apoptosis machinery

1 reference

https://api.crossref.org/works/10.1016%2FS0065-3233%2802%2961002-2

7 January 2021

A kingdom-level phylogeny of eukaryotes based on combined protein data

1 reference

https://api.crossref.org/works/10.1016%2FS0065-3233%2802%2961002-2

7 January 2021

https://api.crossref.org/works/10.1016%2FS0065-3233%2802%2961002-2

1 reference

7 January 2021

The Pfam protein families database.

1 reference

https://api.crossref.org/works/10.1016%2FS0065-3233%2802%2961002-2

7 January 2021

Protein diversity from alternative splicing: a challenge for bioinformatics and post-genome biology

1 reference

https://api.crossref.org/works/10.1016%2FS0065-3233%2802%2961002-2

7 January 2021

Functional diversity of PH domains: an exhaustive modelling study

1 reference

https://api.crossref.org/works/10.1016%2FS0065-3233%2802%2961002-2

7 January 2021

https://api.crossref.org/works/10.1016%2FS0065-3233%2802%2961002-2

1 reference

7 January 2021

Ready for a motif submission? A proposed checklist

1 reference

https://api.crossref.org/works/10.1016%2FS0065-3233%2802%2961002-2

7 January 2021

Protein sequence motifs

1 reference

https://api.crossref.org/works/10.1016%2FS0065-3233%2802%2961002-2

7 January 2021

Cytoplasmic signalling domains: the next generation

1 reference

https://api.crossref.org/works/10.1016%2FS0065-3233%2802%2961002-2

7 January 2021

A flexible motif search technique based on generalized profiles.

1 reference

https://api.crossref.org/works/10.1016%2FS0065-3233%2802%2961002-2

7 January 2021

The evolution of the MAP kinase pathways: coduplication of interacting proteins leads to new signaling cascades

1 reference

https://api.crossref.org/works/10.1016%2FS0065-3233%2802%2961002-2

7 January 2021

EVH1/WH1 domains of VASP and WASP proteins belong to a large family including Ran-binding domains of the RanBP1 family

1 reference

https://api.crossref.org/works/10.1016%2FS0065-3233%2802%2961002-2

7 January 2021

A method to predict functional residues in proteins

1 reference

https://api.crossref.org/works/10.1016%2FS0065-3233%2802%2961002-2

7 January 2021

Genome sequence of the nematode C. elegans: a platform for investigating biology

1 reference

https://api.crossref.org/works/10.1016%2FS0065-3233%2802%2961002-2

7 January 2021

Homology among (betaalpha)(8) barrels: implications for the evolution of metabolic pathways

1 reference

https://api.crossref.org/works/10.1016%2FS0065-3233%2802%2961002-2

7 January 2021

ProDom and ProDom-CG: tools for protein domain analysis and whole genome comparisons

1 reference

https://api.crossref.org/works/10.1016%2FS0065-3233%2802%2961002-2

7 January 2021

Identification of the Drosophila melanogaster homologue of the mammalian signal transducer protein, Vav.

1 reference

https://api.crossref.org/works/10.1016%2FS0065-3233%2802%2961002-2

7 January 2021

Accelerated evolution of crotalinae snake venom gland serine proteases

1 reference

https://api.crossref.org/works/10.1016%2FS0065-3233%2802%2961002-2

7 January 2021

Systematic identification of novel protein domain families associated with nuclear functions

1 reference

https://api.crossref.org/works/10.1016%2FS0065-3233%2802%2961002-2

7 January 2021

Protein interaction maps for complete genomes based on gene fusion events

1 reference

https://api.crossref.org/works/10.1016%2FS0065-3233%2802%2961002-2

7 January 2021

A single point mutation in a group I WW domain shifts its specificity to that of group II WW domains.

1 reference

https://api.crossref.org/works/10.1016%2FS0065-3233%2802%2961002-2

7 January 2021

Distinguishing Homologous from Analogous Proteins

1 reference

https://api.crossref.org/works/10.1016%2FS0065-3233%2802%2961002-2

7 January 2021

Functional genomic analysis of C. elegans chromosome I by systematic RNA interference

1 reference

https://api.crossref.org/works/10.1016%2FS0065-3233%2802%2961002-2

7 January 2021

https://api.crossref.org/works/10.1016%2FS0065-3233%2802%2961002-2

1 reference

7 January 2021

Genes-in-pieces revisited.

1 reference

https://api.crossref.org/works/10.1016%2FS0065-3233%2802%2961002-2

7 January 2021

Functional genomic analysis of cell division in C. elegans using RNAi of genes on chromosome III

1 reference

https://api.crossref.org/works/10.1016%2FS0065-3233%2802%2961002-2

7 January 2021

Analysis and prediction of functional sub-types from protein sequence alignments.

1 reference

https://api.crossref.org/works/10.1016%2FS0065-3233%2802%2961002-2

7 January 2021

Towards a covering set of protein family profiles

1 reference

https://api.crossref.org/works/10.1016%2FS0065-3233%2802%2961002-2

7 January 2021

The PROSITE database, its status in 1999

1 reference

https://api.crossref.org/works/10.1016%2FS0065-3233%2802%2961002-2

7 January 2021

Identification and analysis of PH domain-containing targets of phosphatidylinositol 3-kinase using a novel in vivo assay in yeast

1 reference

https://api.crossref.org/works/10.1016%2FS0065-3233%2802%2961002-2

7 January 2021

Domains in proteins: definitions, location, and structural principles

1 reference

https://api.crossref.org/works/10.1016%2FS0065-3233%2802%2961002-2

7 January 2021

Ras-binding domains: predicting function versus folding

1 reference

https://api.crossref.org/works/10.1016%2FS0065-3233%2802%2961002-2

7 January 2021

Structural basis for specificity switching of the Src SH2 domain

1 reference

https://api.crossref.org/works/10.1016%2FS0065-3233%2802%2961002-2

7 January 2021

Initial sequencing and analysis of the human genome

1 reference

https://api.crossref.org/works/10.1016%2FS0065-3233%2802%2961002-2

7 January 2021

An evolutionary trace method defines binding surfaces common to protein families

1 reference

https://api.crossref.org/works/10.1016%2FS0065-3233%2802%2961002-2

7 January 2021

SCOP: a structural classification of proteins database

1 reference

https://api.crossref.org/works/10.1016%2FS0065-3233%2802%2961002-2

7 January 2021

On the evolution of protein folds: are similar motifs in different protein folds the result of convergence, insertion, or relics of an ancient peptide world?

1 reference

https://api.crossref.org/works/10.1016%2FS0065-3233%2802%2961002-2

7 January 2021

The evolutionary fate and consequences of duplicate genes

1 reference

https://api.crossref.org/works/10.1016%2FS0065-3233%2802%2961002-2

7 January 2021

The Zn-peptidase superfamily: functional convergence after evolutionary divergence

1 reference

https://api.crossref.org/works/10.1016%2FS0065-3233%2802%2961002-2

7 January 2021

Hox group 3 paralogous genes act synergistically in the formation of somitic and neural crest-derived structures

1 reference

https://api.crossref.org/works/10.1016%2FS0065-3233%2802%2961002-2

7 January 2021

Detecting protein function and protein-protein interactions from genome sequences

1 reference

https://api.crossref.org/works/10.1016%2FS0065-3233%2802%2961002-2

7 January 2021

A combined algorithm for genome-wide prediction of protein function

1 reference

https://api.crossref.org/works/10.1016%2FS0065-3233%2802%2961002-2

7 January 2021

Accurate formula for P-values of gapped local sequence and profile alignments

1 reference

https://api.crossref.org/works/10.1016%2FS0065-3233%2802%2961002-2

7 January 2021

Masquerade: a novel secreted serine protease-like molecule is required for somatic muscle attachment in the Drosophila embryo

1 reference

https://api.crossref.org/works/10.1016%2FS0065-3233%2802%2961002-2

7 January 2021

A general method applicable to the search for similarities in the amino acid sequence of two proteins

1 reference

https://api.crossref.org/works/10.1016%2FS0065-3233%2802%2961002-2

7 January 2021

Crystal structure of the worm NitFhit Rosetta Stone protein reveals a Nit tetramer binding two Fhit dimers

1 reference

https://api.crossref.org/works/10.1016%2FS0065-3233%2802%2961002-2

7 January 2021

Evolution of the proteases of blood coagulation and fibrinolysis by assembly from modules

1 reference

https://api.crossref.org/works/10.1016%2FS0065-3233%2802%2961002-2

7 January 2021

Intron-dependent evolution: preferred types of exons and introns

1 reference

https://api.crossref.org/works/10.1016%2FS0065-3233%2802%2961002-2

7 January 2021

Assigning genomic sequences to CATH

1 reference

https://api.crossref.org/works/10.1016%2FS0065-3233%2802%2961002-2

7 January 2021

Empirical statistical estimates for sequence similarity searches.

1 reference

https://api.crossref.org/works/10.1016%2FS0065-3233%2802%2961002-2

7 January 2021

Eukaryotic signalling domain homologues in archaea and bacteria. Ancient ancestry and horizontal gene transfer

1 reference

https://api.crossref.org/works/10.1016%2FS0065-3233%2802%2961002-2

7 January 2021

Identification of distant homologues of fibroblast growth factors suggests a common ancestor for all β-trefoil proteins 1 1Edited by J. Thornton

1 reference

https://api.crossref.org/works/10.1016%2FS0065-3233%2802%2961002-2

7 January 2021

Additional copies of the mitochondrial Ef-Tu and aspartyl-tRNA synthetase genes can compensate for a mutation affecting the maturation of the mitochondrial tRNAAsp

1 reference

https://api.crossref.org/works/10.1016%2FS0065-3233%2802%2961002-2

7 January 2021

Chemical and biological evolution of nucleotide-binding protein

1 reference

https://api.crossref.org/works/10.1016%2FS0065-3233%2802%2961002-2

7 January 2021

Comparative genomics of the eukaryotes

1 reference

https://api.crossref.org/works/10.1016%2FS0065-3233%2802%2961002-2

7 January 2021

Protein fold irregularities that hinder sequence analysis.

1 reference

https://api.crossref.org/works/10.1016%2FS0065-3233%2802%2961002-2

7 January 2021

SMART: a web-based tool for the study of genetically mobile domains

1 reference

https://api.crossref.org/works/10.1016%2FS0065-3233%2802%2961002-2

7 January 2021

The crystal structure of a complement-1q family protein suggests an evolutionary link to tumor necrosis factor

1 reference

https://api.crossref.org/works/10.1016%2FS0065-3233%2802%2961002-2

7 January 2021

A common domain within the proenzyme regions of the drosophila snake and easter proteins and tachypleus proclotting enzyme defines a new subfamily of serine proteases

1 reference

https://api.crossref.org/works/10.1016%2FS0065-3233%2802%2961002-2

7 January 2021

Identification of common molecular subsequences

1 reference

https://api.crossref.org/works/10.1016%2FS0065-3233%2802%2961002-2

7 January 2021

Crystal structure of the Dbl and pleckstrin homology domains from the human Son of sevenless protein

1 reference

https://api.crossref.org/works/10.1016%2FS0065-3233%2802%2961002-2

7 January 2021

Stat5a and Stat5b proteins have essential and nonessential, or redundant, roles in cytokine responses

1 reference

https://api.crossref.org/works/10.1016%2FS0065-3233%2802%2961002-2

7 January 2021

Expression of full-length utrophin prevents muscular dystrophy in mdx mice

1 reference

https://api.crossref.org/works/10.1016%2FS0065-3233%2802%2961002-2

7 January 2021

The PAN module: the N-terminal domains of plasminogen and hepatocyte growth factor are homologous with the apple domains of the prekallikrein family and with a novel domain found in numerous nematode proteins

1 reference

https://api.crossref.org/works/10.1016%2FS0065-3233%2802%2961002-2

7 January 2021

Structure and lipid transport mechanism of a StAR-related domain

1 reference

https://api.crossref.org/works/10.1016%2FS0065-3233%2802%2961002-2

7 January 2021

Assessing annotation transfer for genomics: quantifying the relations between protein sequence, structure and function through traditional and probabilistic scores.

1 reference

https://api.crossref.org/works/10.1016%2FS0065-3233%2802%2961002-2

7 January 2021

Kringles: modules specialized for protein binding. Homology of the gelatin-binding region of fibronectin with the kringle structures of proteases

1 reference

https://api.crossref.org/works/10.1016%2FS0065-3233%2802%2961002-2

7 January 2021

10.1016/S0065-3233(02)61002-2

Identifiers

DOI

1 reference

5 August 2017

1 reference