Versatile RNA-sensing transcriptional regulators for engineering genetic networks (Q35008208)

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:21555549%20AND%20SRC:MED&resulttype=core&format=json

31 January 2020

title

Versatile RNA-sensing transcriptional regulators for engineering genetic networks (English)

1 reference

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31 January 2020

2

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31 January 2020

Vivek Mutalik

series ordinal

3

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31 January 2020

5

Adam P Arkin

1 reference

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31 January 2020

author name string

Julius B Lucks

series ordinal

1

1 reference

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31 January 2020

Denise Wang

series ordinal

4

1 reference

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31 January 2020

language of work or name

English

0 references

publication date

9 May 2011

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:21555549%20AND%20SRC:MED&resulttype=core&format=json

Proceedings of the National Academy of Sciences of the United States of America

31 January 2020

published in

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31 January 2020

volume

108

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31 January 2020

page(s)

8617-8622

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31 January 2020

issue

21

1 reference

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Robust multicellular computing using genetically encoded NOR gates and chemical 'wires'.

31 January 2020

cites work

1 reference

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Tracking, tuning, and terminating microbial physiology using synthetic riboregulators.

8 July 2018

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BglBricks: A flexible standard for biological part assembly

8 July 2018

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Synthetic gene networks that count

8 July 2018

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Modelling amorphous computations with transcription networks

8 July 2018

1 reference

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The second wave of synthetic biology: from modules to systems

8 July 2018

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Frameworks for programming biological function through RNA parts and devices

8 July 2018

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Toward scalable parts families for predictable design of biological circuits

8 July 2018

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Higher-order cellular information processing with synthetic RNA devices

8 July 2018

1 reference

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A quantitative comparison of sRNA-based and protein-based gene regulation

8 July 2018

1 reference

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A modular and extensible RNA-based gene-regulatory platform for engineering cellular function

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3102349

A universal RNAi-based logic evaluator that operates in mammalian cells

8 July 2018

1 reference

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Combinatorial engineering of intergenic regions in operons tunes expression of multiple genes

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3102349

A network of orthogonal ribosome x mRNA pairs.

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3102349

Engineering and characterization of a superfolder green fluorescent protein

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3102349

Regulation of bacterial gene expression by riboswitches

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3102349

Ultrasensitivity and noise propagation in a synthetic transcriptional cascade.

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3102349

Engineered riboregulators enable post-transcriptional control of gene expression

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3102349

Incorporating chemical modification constraints into a dynamic programming algorithm for prediction of RNA secondary structure

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3102349

A theophylline responsive riboswitch based on helix slipping controls gene expression in vivo

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3102349

Sequence elements outside the hammerhead ribozyme catalytic core enable intracellular activity

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3102349

In vivo evolution of an RNA-based transcriptional activator

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3102349

RNA sequences that work as transcriptional activating regions

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3102349

RNA loop-loop interactions as dynamic functional motifs.

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3102349

An antisense RNA-mediated transcriptional attenuation mechanism functions in Escherichia coli

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3102349

Progression of a loop-loop complex to a four-way junction is crucial for the activity of a regulatory antisense RNA

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3102349

Independent and tight regulation of transcriptional units in Escherichia coli via the LacR/O, the TetR/O and AraC/I1-I2 regulatory elements

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3102349

Plasmid pT181 replication is regulated by two countertranscripts

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3102349

Reprogramming bacteria to seek and destroy an herbicide

8 July 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.1015741108

Programmable ligand-controlled riboregulators of eukaryotic gene expression.

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.1015741108

RNA synthetic biology inspired from bacteria: construction of transcription attenuators under antisense regulation.

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.1015741108

Tandem riboswitch architectures exhibit complex gene control functions.

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.1015741108

Response delays and the structure of transcription networks.

21 January 2018

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Setting the standard in synthetic biology.

21 January 2018

1 reference

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Antisense RNA-mediated transcriptional attenuation in plasmid pIP501: the simultaneous interaction between two complementary loop pairs is required for efficient inhibition by the antisense RNA

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.1015741108

Antisense RNA-mediated transcriptional attenuation: an in vitro study of plasmid pT181

21 January 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/21555549

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Four-way junctions in antisense RNA-mRNA complexes involved in plasmid replication control: a common theme?

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/21555549

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Antisense RNA regulation in prokaryotes: rapid RNA/RNA interaction facilitated by a general U-turn loop structure

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/21555549

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Identifiers

DOI

10.1073/PNAS.1015741108

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:21555549%20AND%20SRC:MED&resulttype=core&format=json

31 January 2020

0 references

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:21555549%20AND%20SRC:MED&resulttype=core&format=json

31 January 2020

1 reference