Binding ligand prediction for proteins using partial matching of local surface patches (Q35002231)

5 August 2017

Binding ligand prediction for proteins using partial matching of local surface patches (English)

1 reference

5 August 2017

2

Daisuke Kihara

1 reference

5 August 2017

Lee Sael

1

1 reference

PubMed ID

21614188

5 August 2017

language of work or name

English

0 references

publication date

6 December 2010

1 reference

International Journal of Molecular Sciences

5 August 2017

1 reference

5 August 2017

11

1 reference

5 August 2017

12

1 reference

5 August 2017

5009-5026

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Creative Commons Attribution 4.0 International

5 August 2017

start time

6 December 2010

1 reference

April 2022 Public Data File from Crossref

copyright status

copyrighted

0 references

cites work

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Real-time ligand binding pocket database search using local surface descriptors

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Potential for protein surface shape analysis using spherical harmonics and 3D Zernike descriptors

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Predicting protein function and binding profile via matching of local evolutionary and geometric surface patterns

8 July 2018

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Rapid comparison of properties on protein surface

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Fast protein tertiary structure retrieval based on global surface shape similarity.

8 July 2018

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Characterization of local geometry of protein surfaces with the visibility criterion.

8 July 2018

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8 July 2018

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PocketPicker: analysis of ligand binding-sites with shape descriptors.

8 July 2018

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eF-seek: prediction of the functional sites of proteins by searching for similar electrostatic potential and molecular surface shape.

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Detection of pockets on protein surfaces using small and large probe spheres to find putative ligand binding sites.

8 July 2018

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Local comparison of protein structures highlights cases of convergent evolution in analogous functional sites

8 July 2018

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Shape variation in protein binding pockets and their ligands

8 July 2018

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LIGSITEcsc: predicting ligand binding sites using the Connolly surface and degree of conservation

8 July 2018

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The impact of structural genomics: expectations and outcomes

8 July 2018

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8 July 2018

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PROTEIN FAMILIES AND THEIR EVOLUTION—A STRUCTURAL PERSPECTIVE

8 July 2018

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Automatic annotation of protein function

8 July 2018

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Pocketome via comprehensive identification and classification of ligand binding envelopes.

8 July 2018

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Real spherical harmonic expansion coefficients as 3D shape descriptors for protein binding pocket and ligand comparisons.

8 July 2018

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Inference of protein function from protein structure.

8 July 2018

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Microbial genomes have over 72% structure assignment by the threading algorithm PROSPECTOR_Q.

8 July 2018

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Large-scale assessment of the utility of low-resolution protein structures for biochemical function assignment.

8 July 2018

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SURFACE: a database of protein surface regions for functional annotation

8 July 2018

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The Catalytic Site Atlas: a resource of catalytic sites and residues identified in enzymes using structural data

8 July 2018

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Prediction of functionally important residues based solely on the computed energetics of protein structure.

8 July 2018

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8 July 2018

The Protein Data Bank

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Anatomy of protein pockets and cavities: measurement of binding site geometry and implications for ligand design

8 July 2018

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SURFNET: a program for visualizing molecular surfaces, cavities, and intermolecular interactions

8 July 2018

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Protein superfamilies and domain superfolds

8 July 2018

1 reference

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POCKET: a computer graphics method for identifying and displaying protein cavities and their surrounding amino acids

8 July 2018

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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3100846

New paradigm in protein function prediction for large scale omics analysis

8 July 2018

1 reference

Crossref

https://api.crossref.org/works/10.3390%2FIJMS11125009

Q-SiteFinder: an energy-based method for the prediction of protein-ligand binding sites.

21 January 2018

1 reference

Crossref

https://api.crossref.org/works/10.3390%2FIJMS11125009

Fold independent structural comparisons of protein-ligand binding sites for exploring functional relationships

21 January 2018

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Crossref

https://api.crossref.org/works/10.3390%2FIJMS11125009

21 January 2018

Identifiers

DOI

10.3390/IJMS11125009

1 reference

5 August 2017

0 references

1 reference

5 August 2017

1 reference

PubMed ID

21614188