Curation, integration and visualization of bacterial virulence factors in PATRIC (Q34880579)

5 August 2017

title

Curation, integration and visualization of bacterial virulence factors in PATRIC (English)

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5 August 2017

1 reference

Chunhong Mao

1

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5 August 2017

David Abraham

2

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5 August 2017

Alice R Wattam

3

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5 August 2017

Meredith J C Wilson

4

1 reference

5 August 2017

Maulik Shukla

5

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5 August 2017

Hyun Seung Yoo

6

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5 August 2017

Bruno W Sobral

7

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5 August 2017

language of work or name

English

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publication date

30 September 2014

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5 August 2017

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5 August 2017

volume

31

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5 August 2017

issue

2

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5 August 2017

page(s)

252-258

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Creative Commons Attribution 4.0 International

5 August 2017

copyright license

start time

3 November 2016

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April 2023 Public Data File from Crossref

copyright status

copyrighted

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cites work

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1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4287947

PATRIC, the bacterial bioinformatics database and analysis resource

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4287947

Disruption of mycobactin biosynthesis leads to attenuation of Mycobacterium tuberculosis for growth and virulence

8 July 2018

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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4287947

Paradigms of pathogenesis: targeting the mobile genetic elements of disease

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4287947

NCBI Reference Sequences (RefSeq): current status, new features and genome annotation policy

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4287947

VFDB 2012 update: toward the genetic diversity and molecular evolution of bacterial virulence factors.

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4287947

PATRIC: the comprehensive bacterial bioinformatics resource with a focus on human pathogenic species

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4287947

Integration and visualization of host-pathogen data related to infectious diseases.

8 July 2018

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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4287947

Ongoing and future developments at the Universal Protein Resource

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4287947

FIGfams: yet another set of protein families

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4287947

Virulence factors and their mechanisms of action: the view from a damage-response framework

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4287947

Discovery of virulence factors of pathogenic bacteria

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4287947

MvirDB--a microbial database of protein toxins, virulence factors and antibiotic resistance genes for bio-defence applications

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4287947

Multilocus sequence typing of bacteria

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4287947

ideR, An essential gene in mycobacterium tuberculosis: role of IdeR in iron-dependent gene expression, iron metabolism, and oxidative stress response

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4287947

The salicylate-derived mycobactin siderophores of Mycobacterium tuberculosis are essential for growth in macrophages

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4287947

KEGG: Kyoto Encyclopedia of Genes and Genomes

8 July 2018

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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4287947

Identification of a Mycobacterium tuberculosis gene cluster encoding the biosynthetic enzymes for assembly of the virulence-conferring siderophore mycobactin

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4287947

A genomic perspective on protein families

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4287947

Two fep genes are required for ferrienterochelin uptake in Escherichia coli K-12

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4287947

Aerobactin biosynthesis and transport genes of plasmid ColV-K30 in Escherichia coli K-12

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4287947

Pathotypes of avian Escherichia coli as related to tsh-, pap-, pil-, and iuc-DNA sequences, and antibiotic sensitivity of isolates from internal tissues and the cloacae of broilers

8 July 2018

1 reference

Crossref

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTU631

Host-microbe interactions: virulence mechanisms of bacterial pathogens

21 January 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/25273106

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Mycobacterium leprae iron nutrition: bacterioferritin, mycobactin, exochelin and intracellular growth

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/25273106

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Absence of mycobactin in Mycobacterium leprae; probably a microbe dependent microorganism implications

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/25273106

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Identifiers

DOI

10.1093/BIOINFORMATICS/BTU631

1 reference

journals/bioinformatics/MaoAWWSYS15

5 August 2017

DBLP publication ID

1 reference

DBLP Dataset 2021-01-02

28 January 2021

1 reference

5 August 2017

1 reference