Extensive gene gain associated with adaptive evolution of poxviruses (Q34790231)

4 August 2017

Extensive gene gain associated with adaptive evolution of poxviruses (English)

1 reference

4 August 2017

1 reference

1

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4 August 2017

3

Brandon S Gaut

1 reference

4 August 2017

Pierre F Baldi

2

1 reference

PubMed ID

14660798

4 August 2017

language of work or name

English

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publication date

5 December 2003

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Proceedings of the National Academy of Sciences of the United States of America

4 August 2017

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4 August 2017

100

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4 August 2017

15655-15660

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4 August 2017

26

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Phylogenetics and the cohesion of bacterial genomes

4 August 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=307623

Evolution of inhibitors of apoptosis in baculoviruses and their insect hosts

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=307623

Molecular evolution meets the genomics revolution

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=307623

Genome rearrangements in mammalian evolution: lessons from human and mouse genomes

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=307623

A pox on thee! Manipulation of the host immune system by myxoma virus and implications for viral-host co-adaptation

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=307623

Evolutionary analysis of Arabidopsis, cyanobacterial, and chloroplast genomes reveals plastid phylogeny and thousands of cyanobacterial genes in the nucleus

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=307623

Poxviruses and apoptosis: a time to die.

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=307623

The genome of camelpox virus

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=307623

Extensive genomic duplication during early chordate evolution

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=307623

The genomes of sheeppox and goatpox viruses.

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=307623

The sequence of camelpox virus shows it is most closely related to variola virus, the cause of smallpox

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=307623

The genome of swinepox virus

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=307623

MEGA2: molecular evolutionary genetics analysis software

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=307623

Human monkeypox and smallpox viruses: genomic comparison.

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=307623

Genome of lumpy skin disease virus

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=307623

The genome sequence of Yaba-like disease virus, a yatapoxvirus

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=307623

T-Coffee: A novel method for fast and accurate multiple sequence alignment

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=307623

Complete genomic sequence of the Amsacta moorei entomopoxvirus: analysis and comparison with other poxviruses

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=307623

The genome of fowlpox virus

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=307623

The complete genome sequence of shope (rabbit) fibroma virus

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=307623

The Complete DNA Sequence of Myxoma Virus

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=307623

Positive selection on the H3 hemagglutinin gene of human influenza virus A.

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=307623

Base composition skews, replication orientation, and gene orientation in 12 prokaryote genomes

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=307623

The genome of Melanoplus sanguinipes entomopoxvirus

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=307623

Schlafen, a new family of growth regulatory genes that affect thymocyte development

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=307623

The complete genomic sequence of the modified vaccinia Ankara strain: comparison with other orthopoxviruses

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=307623

PAML: a program package for phylogenetic analysis by maximum likelihood

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=307623

Gapped BLAST and PSI-BLAST: a new generation of protein database search programs

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=307623

Molecular evidence for an ancient duplication of the entire yeast genome

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=307623

Analysis of compositionally biased regions in sequence databases

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=307623

Genome sequence of a human tumorigenic poxvirus: prediction of specific host response-evasion genes

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=307623

Potential virulence determinants in terminal regions of variola smallpox virus genome

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=307623

CLUSTAL W: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=307623

Phylogenetic test of the molecular clock and linearized trees

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=307623

Lengths of chromosomal segments conserved since divergence of man and mouse

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=307623

An evolutionary perspective on synonymous codon usage in unicellular organisms

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=307623

The complete DNA sequence of vaccinia virus

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=307623

The origins of genomic duplications in Arabidopsis.

8 July 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.2136653100

Genome sequence comparison and scenarios for gene rearrangements: a test case.

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.2136653100

Origin and evolution of viral interleukin-10 and other DNA virus genes with vertebrate homologues

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.2136653100

Genome-wide survey for genes horizontally transferred from cellular organisms to baculoviruses.

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.2136653100

Analysis of the nucleotide sequence of 23.8 kbp from the left terminus of the genome of variola major virus strain India-1967.

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.2136653100

Accuracy and power of the likelihood ratio test in detecting adaptive molecular evolution

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.2136653100

21 January 2018

Identifiers

DOI

10.1073/PNAS.2136653100

1 reference

4 August 2017

0 references

1 reference

4 August 2017

1 reference

PubMed ID

14660798