RNA2D3D: a program for generating, viewing, and comparing 3-dimensional models of RNA (Q34768823)

4 August 2017

RNA2D3D: a program for generating, viewing, and comparing 3-dimensional models of RNA (English)

1 reference

4 August 2017

Hugo M Martinez

1

1 reference

PubMed ID

18399701

4 August 2017

Jacob V Maizel

series ordinal

2

1 reference

PubMed ID

18399701

4 August 2017

Bruce A Shapiro

series ordinal

3

1 reference

4 August 2017

1 June 2008

1 reference

Journal of Biomolecular Structure and Dynamics

4 August 2017

1 reference

4 August 2017

25

1 reference

4 August 2017

6

1 reference

4 August 2017

669-683

1 reference

Automated de novo prediction of native-like RNA tertiary structures

4 August 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3727907

Bridging the gap in RNA structure prediction.

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3727907

Structure of the ribosome-bound cricket paralysis virus IRES RNA.

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3727907

The role of a metastable RNA secondary structure in hepatitis delta virus genotype III RNA editing

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3727907

Graphical exploratory data analysis of RNA secondary structure dynamics predicted by the massively parallel genetic algorithm

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3727907

Prediction of RNA secondary structure by free energy minimization

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3727907

The prediction of the wild-type telomerase RNA pseudoknot structure and the pivotal role of the bulge in its formation

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3727907

RNA structure: reading the ribosome

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3727907

Comparative 3-D modeling of tmRNA

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3727907

Building programmable jigsaw puzzles with RNA.

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3727907

7 July 2018

Analysis of RNA motifs

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3727907

Structure of the 30S ribosomal subunit

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3727907

The complete atomic structure of the large ribosomal subunit at 2.4 A resolution

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3727907

MANIP: an interactive tool for modelling RNA.

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3727907

An annealing mutation operator in the genetic algorithms for RNA folding.

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3727907

The crystal structure of an all-RNA hammerhead ribozyme: a proposed mechanism for RNA catalytic cleavage

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3727907

On finding all suboptimal foldings of an RNA molecule

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3727907

Predicting the three-dimensional folding of transfer RNA with a computer modeling protocol

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3727907

Computer modeling 16 S ribosomal RNA.

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3727907

The combination of symbolic and numerical computation for three-dimensional modeling of RNA.

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3727907

Modeling the three-dimensional structure of RNA using discrete nucleotide conformational sets.

7 July 2018

1 reference

https://api.crossref.org/works/10.1080%2F07391102.2008.10531240

Cryo-EM visualization of a viral internal ribosome entry site bound to human ribosomes: the IRES functions as an RNA-based translation factor.

21 January 2018

1 reference

https://api.crossref.org/works/10.1080%2F07391102.2008.10531240

The massively parallel genetic algorithm for RNA folding: MIMD implementation and population variation.

21 January 2018

1 reference

https://api.crossref.org/works/10.1080%2F07391102.2008.10531240

STRUCTURELAB: a heterogeneous bioinformatics system for RNA structure analysis.

21 January 2018

1 reference

https://api.crossref.org/works/10.1080%2F07391102.2008.10531240

Stem Trace: an interactive visual tool for comparative RNA structure analysis.

21 January 2018

1 reference

https://api.crossref.org/works/10.1080%2F07391102.2008.10531240

Predicting RNA H-type pseudoknots with the massively parallel genetic algorithm.

21 January 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3727907

RNA folding pathway functional intermediates: their prediction and analysis

26 October 2018

1 reference

12 December 2020

Molecular modeling and dynamics studies of HIV-1 kissing loop structures

1 reference

12 December 2020

The impact of dyskeratosis congenita mutations on the structure and dynamics of the human telomerase RNA pseudoknot domain

1 reference

12 December 2020

Molecular dynamics investigations of hammerhead ribozyme RNA

1 reference

12 December 2020

10.1080/07391102.2008.10531240

Identifiers

DOI

1 reference

4 August 2017

1 reference

4 August 2017

1 reference

PubMed ID

18399701