Evidence for stabilizing selection on codon usage in chromosomal rearrangements of Drosophila pseudoobscura. (Q34713978)

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21 February 2020

title

Evidence for stabilizing selection on codon usage in chromosomal rearrangements of Drosophila pseudoobscura (English)

1 reference

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21 February 2020

main subject

Drosophila

0 references

Drosophila pseudoobscura

object named as

Drosophila pseudoobscura

1 reference

1

1 reference

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21 February 2020

author name string

Gwilym D Haynes

2

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21 February 2020

Dianhui Zhu

3

1 reference

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21 February 2020

Matthew Batterton

4

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21 February 2020

Hsu Chao

5

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21 February 2020

Shannon Dugan

6

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21 February 2020

Mehwish Javaid

7

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21 February 2020

Joy C Jayaseelan

8

1 reference

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21 February 2020

Sandra Lee

9

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21 February 2020

Mingmei Li

10

1 reference

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21 February 2020

Fiona Ongeri

11

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21 February 2020

Sulan Qi

12

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21 February 2020

Yi Han

13

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21 February 2020

Harshavardhan Doddapaneni

14

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21 February 2020

Stephen Richards

15

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21 February 2020

Stephen W Schaeffer

16

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21 February 2020

publication date

17 October 2014

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21 February 2020

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21 February 2020

volume

4

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21 February 2020

issue

12

1 reference

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21 February 2020

page(s)

2433-2449

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Evidence that natural selection on codon usage in Drosophila pseudoobscura varies across codons

21 February 2020

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1 reference

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7 July 2018

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7 July 2018

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7 July 2018

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7 July 2018

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7 July 2018

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7 July 2018

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Population genomics of inversion polymorphisms in Drosophila melanogaster

7 July 2018

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7 July 2018

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Recombination modulates how selection affects linked sites in Drosophila

7 July 2018

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7 July 2018

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7 July 2018

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Balanced codon usage optimizes eukaryotic translational efficiency

7 July 2018

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Mutation bias is the driving force of codon usage in the Gallus gallus genome

7 July 2018

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7 July 2018

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Effects of inversions on within- and between-species recombination and divergence

7 July 2018

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7 July 2018

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7 July 2018

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7 July 2018

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7 July 2018

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7 July 2018

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7 July 2018

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Recombination yet inefficient selection along the Drosophila melanogaster subgroup's fourth chromosome

7 July 2018

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Experimentally increased codon bias in the Drosophila Adh gene leads to an increase in larval, but not adult, alcohol dehydrogenase activity

7 July 2018

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7 July 2018

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Estimating selection intensity on synonymous codon usage in a nonequilibrium population

7 July 2018

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The genomics of speciation in Drosophila: diversity, divergence, and introgression estimated using low-coverage genome sequencing.

7 July 2018

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7 July 2018

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7 July 2018

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7 July 2018

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7 July 2018

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7 July 2018

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7 July 2018

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DNA indels in coding regions reveal selective constraints on protein evolution in the human lineage.

7 July 2018

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7 July 2018

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A Mechanism Intrinsic to Heterozygous Inversions Affecting Observed Recombination Frequencies in Adjacent Regions

7 July 2018

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Genetics of Natural Populations. II. Genic Variation in Populations of Drosophila Pseudoobscura Inhabiting Isolated Mountain Ranges

7 July 2018

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Inversions in the Chromosomes of Drosophila Pseudoobscura

7 July 2018

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The Relations of Inversions in the X Chromosome of Drosophila Melanogaster to Crossing over and Disjunction

7 July 2018

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Evaluation of the genomic extent of effects of fixed inversion differences on intraspecific variation and interspecific gene flow in Drosophila pseudoobscura and D. persimilis

7 July 2018

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Maximum likelihood estimation of ancestral codon usage bias parameters in Drosophila.

7 July 2018

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The Suppression of Crossing Over in Inversion Heterozygotes of Drosophila Pseudoobscura

7 July 2018

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Selection in favor of nucleotides G and C diversifies evolution rates and levels of polymorphism at mammalian synonymous sites

7 July 2018

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Chromosome inversions, local adaptation and speciation

7 July 2018

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Mechanisms of genetic exchange within the chromosomal inversions of Drosophila pseudoobscura

7 July 2018

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Comparative genome sequencing of Drosophila pseudoobscura: chromosomal, gene, and cis-element evolution

7 July 2018

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Genetics of natural populations. XIX. Origin of heterosis through natural selection in populations of Drosophila pseudoobscura

7 July 2018

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The fine-scale structure of recombination rate variation in the human genome

7 July 2018

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Protein evolution and codon usage bias on the neo-sex chromosomes of Drosophila miranda.

7 July 2018

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Evolutionary genomics of inversions in Drosophila pseudoobscura: evidence for epistasis

7 July 2018

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In vivo introduction of unpreferred synonymous codons into the Drosophila Adh gene results in reduced levels of ADH protein

7 July 2018

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Synonymous codon usage is subject to selection in thermophilic bacteria

7 July 2018

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Population, evolutionary and genomic consequences of interference selection

7 July 2018

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7 July 2018

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Does recombination improve selection on codon usage? Lessons from nematode and fly complete genomes

7 July 2018

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Molecular population genetics of X-linked genes in Drosophila pseudoobscura

7 July 2018

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The effects of Hill-Robertson interference between weakly selected mutations on patterns of molecular evolution and variation

7 July 2018

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Effect of inversion polymorphism on the neutral nucleotide variability of linked chromosomal regions in Drosophila

7 July 2018

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Natural selection on synonymous sites is correlated with gene length and recombination in Drosophila.

7 July 2018

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Chromosomal structure and recombination between inversions in Drosophila subobscura.

7 July 2018

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Recombination and gene flux caused by gene conversion and crossing over in inversion heterokaryotypes.

7 July 2018

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Natural selection and the frequency distributions of "silent" DNA polymorphism in Drosophila.

7 July 2018

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Reduced natural selection associated with low recombination in Drosophila melanogaster.

7 July 2018

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Synonymous codon usage in Drosophila melanogaster: natural selection and translational accuracy.

7 July 2018

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Inferring weak selection from patterns of polymorphism and divergence at "silent" sites in Drosophila DNA.

7 July 2018

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Possibility of extensive neutral evolution under stabilizing selection with special reference to nonrandom usage of synonymous codons

7 July 2018

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Correlation between the abundance of Escherichia coli transfer RNAs and the occurrence of the respective codons in its protein genes: A proposal for a synonymous codon choice that is optimal for the E. coli translational system

7 July 2018

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Frequency changes of new inversions in populations under mutation-selection equilibria

7 July 2018

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Codon usage and tRNA content in unicellular and multicellular organisms

7 July 2018

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The codon Adaptation Index--a measure of directional synonymous codon usage bias, and its potential applications

7 July 2018

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Simple methods for estimating the numbers of synonymous and nonsynonymous nucleotide substitutions

7 July 2018

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Missense misreading of asparagine codons as a function of codon identity and context

7 July 2018

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Models of nearly neutral mutations with particular implications for nonrandom usage of synonymous codons.

7 July 2018

1 reference

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Distinguishing the forces controlling genetic variation at the Xdh locus in Drosophila pseudoobscura

7 July 2018

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Statistical method for testing the neutral mutation hypothesis by DNA polymorphism

7 July 2018

1 reference

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The 'effective number of codons' used in a gene

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4267939

The selection-mutation-drift theory of synonymous codon usage

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4267939

Levels of naturally occurring DNA polymorphism correlate with recombination rates in D. melanogaster

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4267939

Estimates of gene flow in Drosophila pseudoobscura determined from nucleotide sequence analysis of the alcohol dehydrogenase region

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4267939

On the number of segregating sites in genetical models without recombination

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4267939

Reproductive isolation and local adaptation quantified for a chromosome inversion in a malaria mosquito

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4267939

GC-biased gene conversion and selection affect GC content in the Oryza genus (rice).

26 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4267939

Evolutionary history of the third chromosome gene arrangements of Drosophila pseudoobscura inferred from inversion breakpoints

26 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4267939

Determinants of synonymous and nonsynonymous variability in three species of Drosophila

26 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4267939

Analysis of the genome sequences of three Drosophila melanogaster spontaneous mutation accumulation lines

26 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4267939

Reduced effectiveness of selection caused by a lack of recombination.

26 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4267939

Selection in heterogeneous environments maintains the gene arrangement polymorphism of Drosophila pseudoobscura.

26 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4267939

Reduced selection for codon usage bias in Drosophila miranda

26 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4267939

Fine-scale crossover rate heterogeneity in Drosophila pseudoobscura.

26 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4267939

Selection intensity on preferred codons correlates with overall codon usage bias in Caenorhabditis remanei.

26 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4267939

Positive selection of synonymous mutations in vesicular stomatitis virus

26 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4267939

Selection on codon usage in Drosophila americana.

26 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4267939

Cytosine deamination plays a primary role in the evolution of mammalian isochores

26 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4267939

The effect of linkage on limits to artificial selection

26 October 2018

1 reference

12 December 2020

Inversion polymorphisms and nucleotide variability in Drosophila

1 reference

12 December 2020

Survival probabilities f new inversions in large populations

1 reference

12 December 2020

Evidence for Purifying Selection Against Synonymous Mutations in Mammalian Exonic Splicing Enhancers

1 reference

12 December 2020

Molecular population genetics of sequence length diversity in the Adh region of Drosophila pseudoobscura

1 reference

12 December 2020

Interchromosomal effects on crossing over in Drosophila

1 reference

12 December 2020

Identifiers

DOI

10.1534/G3.114.014860

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25326424%20AND%20SRC:MED&resulttype=core&format=json

21 February 2020

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25326424%20AND%20SRC:MED&resulttype=core&format=json

21 February 2020

PubMed publication ID

25326424

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25326424%20AND%20SRC:MED&resulttype=core&format=json