Practical use of chemical shift databases for protein solid-state NMR: 2D chemical shift maps and amino-acid assignment with secondary-structure information (Q34691884)

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scientific article published on 28 April 2013

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English	Practical use of chemical shift databases for protein solid-state NMR: 2D chemical shift maps and amino-acid assignment with secondary-structure information	scientific article published on 28 April 2013

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scholarly article

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29 February 2020

Practical use of chemical shift databases for protein solid-state NMR: 2D chemical shift maps and amino-acid assignment with secondary-structure information (English)

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protein structure

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Keith J Fritzsching

1

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2

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4

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author name string

K Schmidt-Rohr

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publication date

28 April 2013

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Journal of Biomolecular NMR

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56

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2

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155-167

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describes a project that uses

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based on heuristic

inferred from PubMed Central ID database lookup

https://scigraph.springernature.com/pub.10.1007/s10858-013-9732-z

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Spectral editing of two-dimensional magic-angle-spinning solid-state NMR spectra for protein resonance assignment and structure determination

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PACSY, a relational database management system for protein structure and chemical shift analysis

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Membrane protein structure and dynamics from NMR spectroscopy

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Accurate measurement of methyl 13C chemical shifts by solid-state NMR for the determination of protein side chain conformation: the influenza a M2 transmembrane peptide as an example

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Structure and dynamics of membrane proteins by magic angle spinning solid-state NMR.

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Solution Structure of the Integral Human Membrane Protein VDAC-1 in Detergent Micelles

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Amyloid fibrils of the HET-s(218-289) prion form a beta solenoid with a triangular hydrophobic core

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Consistent blind protein structure generation from NMR chemical shift data

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BioMagResBank (BMRB) as a partner in the Worldwide Protein Data Bank (wwPDB): new policies affecting biomolecular NMR depositions

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Solid-state NMR studies of the structure, dynamics, and assembly of beta-sheet membrane peptides and alpha-helical membrane proteins with antibiotic activities

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The CCPN data model for NMR spectroscopy: development of a software pipeline

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STRIDE: a web server for secondary structure assignment from known atomic coordinates of proteins

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Protein structure prediction using Rosetta

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7 July 2018

Protein NMR structure determination with automated NOE assignment using the new software CANDID and the torsion angle dynamics algorithm DYANA

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Protein backbone angle restraints from searching a database for chemical shift and sequence homology

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Automated analysis of protein NMR assignments using methods from artificial intelligence.

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The 13C chemical-shift index: a simple method for the identification of protein secondary structure using 13C chemical-shift data

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7 July 2018

Dictionary of protein secondary structure: pattern recognition of hydrogen-bonded and geometrical features

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Relationship between nuclear magnetic resonance chemical shift and protein secondary structure

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Probabilistic Identification of Spin Systems and their Assignments including Coil-Helix Inference as Output (PISTACHIO).

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TSAR: a program for automatic resonance assignment using 2D cross-sections of high dimensionality, high-resolution spectra

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21 January 2018

Secondary structural analysis of proteins based on (13)C chemical shift assignments in unresolved solid-state NMR spectra enhanced by fragmented structure database

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26 October 2018

Magic-angle spinning solid-state NMR spectroscopy of the beta1 immunoglobulin binding domain of protein G (GB1): 15N and 13C chemical shift assignments and conformational analysis

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Identifiers

10.1007/S10858-013-9732-Z

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29 February 2020

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29 February 2020

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