Enhanced methods for unbiased deep sequencing of Lassa and Ebola RNA viruses from clinical and biological samples (Q34676766)

3 August 2017

title

Enhanced methods for unbiased deep sequencing of Lassa and Ebola RNA viruses from clinical and biological samples (English)

1 reference

3 August 2017

main subject

Orthoebolavirus zairense

0 references

0 references

1 reference

27

Pardis C Sabeti

1 reference

3 August 2017

22

Robert F Garry

1 reference

3 August 2017

21

Christian Happi

1 reference

3 August 2017

2

Kristian G Andersen

1 reference

3 August 2017

20

Lisa Hensley

1 reference

3 August 2017

12

Tarjei S Mikkelsen

1 reference

3 August 2017

16

Augustine Goba

1 reference

3 August 2017

25

Andreas Gnirke

1 reference

3 August 2017

1

Christian B Matranga

1 reference

3 August 2017

3

Sarah Winnicki

1 reference

3 August 2017

11

Lina M Moses

1 reference

3 August 2017

7

Matthew Stremlau

1 reference

3 August 2017

Michele Busby

4

1 reference

3 August 2017

Adrianne D Gladden

5

1 reference

3 August 2017

Ryan Tewhey

6

1 reference

3 August 2017

Aaron Berlin

8

1 reference

3 August 2017

Stephen K Gire

9

1 reference

3 August 2017

Eleina England

10

1 reference

3 August 2017

Ikponmwonsa Odia

13

1 reference

3 August 2017

Philomena E Ehiane

14

1 reference

3 August 2017

Onikepe Folarin

15

1 reference

3 August 2017

S Humarr Kahn

17

1 reference

3 August 2017

Donald S Grant

18

1 reference

3 August 2017

Anna Honko

19

1 reference

3 August 2017

Christine M Malboeuf

23

1 reference

3 August 2017

Bruce W Birren

24

1 reference

3 August 2017

Joshua Z Levin

26

1 reference

3 August 2017

publication date

1 January 2014

1 reference

3 August 2017

1 reference

3 August 2017

volume

15

1 reference

3 August 2017

issue

11

1 reference

3 August 2017

page(s)

519

1 reference

Genomic surveillance elucidates Ebola virus origin and transmission during the 2014 outbreak

3 August 2017

cites work

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4262991

Actionable diagnosis of neuroleptospirosis by next-generation sequencing

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4262991

Emergence of Zaire Ebola Virus Disease in Guinea

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4262991

How do filovirus filaments bend without breaking?

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4262991

7 July 2018

Viral pathogen discovery

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4262991

Comparative analysis of RNA sequencing methods for degraded or low-input samples

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4262991

Transcriptional profiling of the circulating immune response to lassa virus in an aerosol model of exposure

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4262991

Epidemiology. Emerging disease or diagnosis?

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4262991

Molecular evolution of lineage 2 West Nile virus

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4262991

Pathogenesis of the viral hemorrhagic fevers

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4262991

Complete viral RNA genome sequencing of ultra-low copy samples by sequence-independent amplification

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4262991

Selective depletion of rRNA enables whole transcriptome profiling of archival fixed tissue

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4262991

VarScan 2: somatic mutation and copy number alteration discovery in cancer by exome sequencing

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4262991

Emerging trends in Lassa fever: redefining the role of immunoglobulin M and inflammation in diagnosing acute infection

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4262991

Lassa hemorrhagic fever in a late term pregnancy from northern Sierra Leone with a positive maternal outcome: case report

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4262991

Hybrid selection for sequencing pathogen genomes from clinical samples

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4262991

Synthetic spike-in standards for RNA-seq experiments

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4262991

Full-length transcriptome assembly from RNA-Seq data without a reference genome

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4262991

Pathogenesis of Lassa fever in cynomolgus macaques

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4262991

BamTools: a C++ API and toolkit for analyzing and managing BAM files

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4262991

The Genome Analysis Toolkit: A MapReduce framework for analyzing next-generation DNA sequencing data

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4262991

Improved detection of Lassa virus by reverse transcription-PCR targeting the 5' region of S RNA.

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4262991

Enrichment of sequencing targets from the human genome by solution hybridization

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4262991

Architecture and secondary structure of an entire HIV-1 RNA genome

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4262991

Fast and accurate short read alignment with Burrows-Wheeler transform

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4262991

Solution hybrid selection with ultra-long oligonucleotides for massively parallel targeted sequencing

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4262991

Mapping and quantifying mammalian transcriptomes by RNA-Seq

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4262991

Dynamic repertoire of a eukaryotic transcriptome surveyed at single-nucleotide resolution

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4262991

The transcriptional landscape of the yeast genome defined by RNA sequencing

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4262991

RT-PCR assay for detection of Lassa virus and related Old World arenaviruses targeting the L gene

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4262991

Mastomys natalensis and Lassa fever, West Africa

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4262991

Lassa fever in Guinea: II. Distribution and prevalence of Lassa virus infection in small mammals

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4262991

Rapid detection and quantification of RNA of Ebola and Marburg viruses, Lassa virus, Crimean-Congo hemorrhagic fever virus, Rift Valley fever virus, dengue virus, and yellow fever virus by real-time reverse transcription-PCR.

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4262991

Arenaviruses: genomic RNAs, transcription, and replication

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4262991

Genetic diversity among Lassa virus strains

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4262991

Comparison of the transcription and replication strategies of marburg virus and Ebola virus by using artificial replication systems

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4262991

Lassa virus infection of rhesus monkeys: pathogenesis and treatment with ribavirin

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4262991

Lassa fever, a new virus disease of man from West Africa. I. Clinical description and pathological findings

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4262991

Variation among human 28S ribosomal RNA genes

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4262991

A case-control study of the clinical diagnosis and course of Lassa fever

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4262991

Isolation of Marburg-like virus from a case of haemorrhagic fever in Zaire

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4262991

Viral haemorrhagic fever in southern Sudan and northern Zaire. Preliminary studies on the aetiological agent

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4262991

Isolation and partial characterisation of a new virus causing acute haemorrhagic fever in Zaire

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4262991

Conserved RNA secondary structures in viral genomes: a survey.

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4262991

10.1186/PREACCEPT-1698056557139770

26 October 2018

Identifiers

DOI

1 reference

3 August 2017

1 reference

3 August 2017

1 reference