Mapping the RNA binding sites for human immunodeficiency virus type-1 gag and NC proteins within the complete HIV-1 and -2 untranslated leader regions. (Q34673247)

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English	Mapping the RNA binding sites for human immunodeficiency virus type-1 gag and NC proteins within the complete HIV-1 and -2 untranslated leader regions.	scientific article

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13 November 2019

Mapping the RNA binding sites for human immunodeficiency virus type-1 gag and NC proteins within the complete HIV-1 and -2 untranslated leader regions (English)

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13 November 2019

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13 November 2019

author name string

C K Damgaard

1

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13 November 2019

H Dyhr-Mikkelsen

2

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1 August 1998

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13 November 2019

Nucleic Acids Research

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13 November 2019

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13 November 2019

3667-3676

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13 November 2019

16

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13 November 2019

Nonreciprocal packaging of human immunodeficiency virus type 1 and type 2 RNA: a possible role for the p2 domain of Gag in RNA encapsidation

1 reference

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7 July 2018

Structure of the HIV-1 nucleocapsid protein bound to the SL3 psi-RNA recognition element

1 reference

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7 July 2018

The primer binding site on the RNA genome of human and simian immunodeficiency viruses is flanked by an upstream hairpin structure

1 reference

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7 July 2018

Efficient encapsidation of human immunodeficiency virus type 1 vectors and further characterization of cis elements required for encapsidation

1 reference

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7 July 2018

Location of cis-acting signals important for RNA encapsidation in the leader sequence of human immunodeficiency virus type 2.

1 reference

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7 July 2018

Mutant human immunodeficiency virus type 1 genomes with defects in RNA dimerization or encapsidation

1 reference

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7 July 2018

Mutations in the kissing-loop hairpin of human immunodeficiency virus type 1 reduce viral infectivity as well as genomic RNA packaging and dimerization

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7 July 2018

A conserved hairpin motif in the R-U5 region of the human immunodeficiency virus type 1 RNA genome is essential for replication

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7 July 2018

Position dependence of functional hairpins important for human immunodeficiency virus type 1 RNA encapsidation in vivo

1 reference

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7 July 2018

A high affinity binding site for the HIV-1 nucleocapsid protein

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=147765

7 July 2018

Binding properties of human immunodeficiency virus type-2 (HIV-2) RNA corresponding to the packaging signal to its nucleocapsid protein.

1 reference

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7 July 2018

Role of the DIS hairpin in replication of human immunodeficiency virus type 1

1 reference

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7 July 2018

Charged amino acid residues of human immunodeficiency virus type 1 nucleocapsid p7 protein involved in RNA packaging and infectivity.

1 reference

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7 July 2018

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7 July 2018

Structure and function of the human immunodeficiency virus leader RNA.

1 reference

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7 July 2018

Human immunodeficiency virus Type 1 nucleocapsid protein (NCp7) directs specific initiation of minus-strand DNA synthesis primed by human tRNA(Lys3) in vitro: studies of viral RNA molecules mutated in regions that flank the primer binding site

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7 July 2018

Requirements for kissing-loop-mediated dimerization of human immunodeficiency virus RNA.

1 reference

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7 July 2018

A loop-loop "kissing" complex is the essential part of the dimer linkage of genomic HIV-1 RNA

1 reference

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7 July 2018

The human immunodeficiency virus type 1 encapsidation site is a multipartite RNA element composed of functional hairpin structures

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=147765

7 July 2018

Effect of human immunodeficiency virus type 1 (HIV-1) nucleocapsid protein on HIV-1 reverse transcriptase activity in vitro

1 reference

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7 July 2018

trans-acting proteins involved in RNA encapsidation and viral assembly in human immunodeficiency virus type 1.

1 reference

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7 July 2018

Mutations of basic amino acids of NCp7 of human immunodeficiency virus type 1 affect RNA binding in vitro

1 reference

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7 July 2018

The two zinc fingers in the human immunodeficiency virus type 1 nucleocapsid protein are not functionally equivalent

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=147765

7 July 2018

Identification of a binding site for the human immunodeficiency virus type 1 nucleocapsid protein

1 reference

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7 July 2018

Simian immunodeficiency virus RNA is efficiently encapsidated by human immunodeficiency virus type 1 particles

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7 July 2018

Interactions between HIV-1 nucleocapsid protein and viral DNA may have important functions in the viral life cycle

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7 July 2018

Mapping of functionally important residues of a cysteine-histidine box in the human immunodeficiency virus type 1 nucleocapsid protein

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=147765

7 July 2018

Specific binding of human immunodeficiency virus type 1 gag polyprotein and nucleocapsid protein to viral RNAs detected by RNA mobility shift assays

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=147765

7 July 2018

Identification of the primary site of the human immunodeficiency virus type 1 RNA dimerization in vitro

1 reference

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7 July 2018

Mutational analysis of cis-acting packaging signals in human immunodeficiency virus type 1 RNA.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=147765

7 July 2018

Specific binding of HIV-1 nucleocapsid protein to PSI RNA in vitro requires N-terminal zinc finger and flanking basic amino acid residues

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7 July 2018

DNA strand exchange and selective DNA annealing promoted by the human immunodeficiency virus type 1 nucleocapsid protein

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7 July 2018

Retroviral RNA packaging: a review

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7 July 2018

An integration-defective U5 deletion mutant of human immunodeficiency virus type 1 reverts by eliminating additional long terminal repeat sequences

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7 July 2018

Analysis in human immunodeficiency virus type 1 vectors of cis-acting sequences that affect gene transfer into human lymphocytes.

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7 July 2018

RNA secondary structure and binding sites for gag gene products in the 5' packaging signal of human immunodeficiency virus type 1.

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7 July 2018

Human immunodeficiency virus type 2 (HIV-2): packaging signal and associated negative regulatory element

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7 July 2018

cis-acting sequences involved in human immunodeficiency virus type 1 RNA packaging

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7 July 2018

Retroviral nucleocapsid domains mediate the specific recognition of genomic viral RNAs by chimeric Gag polyproteins during RNA packaging in vivo.

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7 July 2018

Nucleocapsid protein effects on the specificity of retrovirus RNA encapsidation

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7 July 2018

Tools for the production and purification of full-length, N- or C-terminal 32P-labeled protein, applied to HIV-1 Gag and Rev.

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7 July 2018

Analysis of the nucleic acid annealing activities of nucleocapsid protein from HIV-1.

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7 July 2018

First glimpses at structure-function relationships of the nucleocapsid protein of retroviruses

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7 July 2018

Two strong 5' splice sites and competing, suboptimal 3' splice sites involved in alternative splicing of human immunodeficiency virus type 1 RNA.

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7 July 2018

Identification of a sequence required for efficient packaging of human immunodeficiency virus type 1 RNA into virions

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7 July 2018

HIV-1 reverse transcriptase specifically interacts with the anticodon domain of its cognate primer tRNA.

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7 July 2018

A mutant of human immunodeficiency virus with reduced RNA packaging and abnormal particle morphology

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Noninfectious human immunodeficiency virus type 1 mutants deficient in genomic RNA.

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7 July 2018

Mutations of RNA and protein sequences involved in human immunodeficiency virus type 1 packaging result in production of noninfectious virus

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7 July 2018

Binding of human immunodeficiency virus type 1 (HIV-1) RNA to recombinant HIV-1 gag polyprotein

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=147765

7 July 2018

Viral RNA annealing activities of human immunodeficiency virus type 1 nucleocapsid protein require only peptide domains outside the zinc fingers

1 reference

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7 July 2018

The human immunodeficiency virus type 1 packaging signal and major splice donor region have a conserved stable secondary structure

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=147765

7 July 2018

RNA packaging signal of human immunodeficiency virus type 1

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=147765

7 July 2018

Human immunodeficiency virus vectors for inducible expression of foreign genes

1 reference

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7 July 2018

Specific binding of a basic peptide from HIV-1 Rev

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=147765

7 July 2018

Regulation of mRNA accumulation by a human immunodeficiency virus trans-activator protein

1 reference

https://api.crossref.org/works/10.1093%2FNAR%2F26.16.3667

21 January 2018

Functional sites in the 5' region of human immunodeficiency virus type 1 RNA form defined structural domains

1 reference

https://api.crossref.org/works/10.1093%2FNAR%2F26.16.3667

21 January 2018

Analysis of binding elements in the human immunodeficiency virus type 1 genomic RNA and nucleocapsid protein

1 reference

https://api.crossref.org/works/10.1093%2FNAR%2F26.16.3667

21 January 2018

Cis elements and trans-acting factors involved in the RNA dimerization of the human immunodeficiency virus HIV-1.

1 reference

https://api.crossref.org/works/10.1093%2FNAR%2F26.16.3667

21 January 2018

HIV-1 reverse transcriptase discriminates against non-self tRNA primers

1 reference

https://pubmed.ncbi.nlm.nih.gov/9685481

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

A short sequence upstream of the 5' major splice site is important for encapsidation of HIV-1 genomic RNA

1 reference

https://pubmed.ncbi.nlm.nih.gov/9685481

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Nucleic acid binding properties of recombinant Zn2 HIV-1 nucleocapsid protein are modulated by COOH-terminal processing

1 reference

https://pubmed.ncbi.nlm.nih.gov/9685481

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Recombinant HIV-1 nucleocapsid protein accelerates HIV-1 reverse transcriptase catalyzed DNA strand transfer reactions and modulates RNase H activity

1 reference

https://pubmed.ncbi.nlm.nih.gov/9685481

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Initiation of reverse transcription of HIV-1: secondary structure of the HIV-1 RNA/tRNA(3Lys) (template/primer)

1 reference

https://pubmed.ncbi.nlm.nih.gov/9685481

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Recombinant HIV-1 nucleocapsid protein p15 produced as a fusion protein with glutathione S-transferase in Escherichia coli mediates dimerization and enhances reverse transcription of retroviral RNA

1 reference

https://pubmed.ncbi.nlm.nih.gov/9685481

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Conformational and nucleic acid binding studies on the synthetic nucleocapsid protein of HIV-1

1 reference

https://pubmed.ncbi.nlm.nih.gov/9685481

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Identifiers

10.1093/NAR/26.16.3667

1 reference

Europe PubMed Central

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:9685481%20AND%20SRC:MED&resulttype=core&format=json

13 November 2019

1 reference

Europe PubMed Central

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:9685481%20AND%20SRC:MED&resulttype=core&format=json

13 November 2019

1 reference

Europe PubMed Central

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:9685481%20AND%20SRC:MED&resulttype=core&format=json

13 November 2019

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