TRACER: a resource to study the regulatory architecture of the mouse genome (Q34645234)

3 August 2017

TRACER: a resource to study the regulatory architecture of the mouse genome (English)

1 reference

3 August 2017

6

Damian Smedley

1 reference

3 August 2017

7

François Spitz

1 reference

3 August 2017

2

Orsolya Symmons

1 reference

3 August 2017

3

Veli Vural Uslu

1 reference

3 August 2017

Chao-Kung Chen

1

1 reference

PubMed ID

23547943

3 August 2017

Taro Tsujimura

series ordinal

4

1 reference

PubMed ID

23547943

3 August 2017

Sandra Ruf

series ordinal

5

1 reference

PubMed ID

23547943

3 August 2017

language of work or name

English

0 references

publication date

2 April 2013

1 reference

3 August 2017

1 reference

3 August 2017

14

1 reference

3 August 2017

215

1 reference

https://scigraph.springernature.com/pub.10.1186/1471-2164-14-215

3 August 2017

0 references

cites work

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A map of the cis-regulatory sequences in the mouse genome

7 July 2018

1 reference

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Genetic labeling of neuronal subsets through enhancer trapping in mice

7 July 2018

1 reference

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Precision genome engineering with programmable DNA-nicking enzymes

7 July 2018

1 reference

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Spatial partitioning of the regulatory landscape of the X-inactivation centre

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3618316

Topological domains in mammalian genomes identified by analysis of chromatin interactions

7 July 2018

1 reference

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Targeted gene addition to a predetermined site in the human genome using a ZFN-based nicking enzyme

7 July 2018

1 reference

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Extensive promoter-centered chromatin interactions provide a topological basis for transcription regulation

7 July 2018

1 reference

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HERC2 rs12913832 modulates human pigmentation by attenuating chromatin-loop formation between a long-range enhancer and the OCA2 promoter

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3618316

A regulatory archipelago controls Hox genes transcription in digits

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3618316

7 July 2018

1 reference

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MiMIC: a highly versatile transposon insertion resource for engineering Drosophila melanogaster genes

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3618316

Mapping and analysis of chromatin state dynamics in nine human cell types

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3618316

Large-scale analysis of the regulatory architecture of the mouse genome with a transposon-associated sensor

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3618316

9p21 DNA variants associated with coronary artery disease impair interferon-γ signalling response

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3618316

A high-resolution anatomical atlas of the transcriptome in the mouse embryo

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3618316

A unique chromatin signature uncovers early developmental enhancers in humans

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3618316

Histone H3K27ac separates active from poised enhancers and predicts developmental state

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3618316

The mouse Gene Expression Database (GXD): 2011 update

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3618316

The UCSC Genome Browser database: update 2011

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3618316

zTrap: zebrafish gene trap and enhancer trap database.

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3618316

Gene targeting by homologous recombination in mouse zygotes mediated by zinc-finger nucleases

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3618316

Annotating non-coding regions of the genome

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3618316

An 8q24 gene desert variant associated with prostate cancer risk confers differential in vivo activity to a MYC enhancer

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3618316

KRAB-zinc finger proteins and KAP1 can mediate long-range transcriptional repression through heterochromatin spreading

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3618316

A systems approach reveals that the myogenesis genome network is regulated by the transcriptional repressor RP58

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3618316

EMAGE mouse embryo spatial gene expression database: 2010 update

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3618316

Genomic views of distant-acting enhancers

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3618316

Molecular evolution of a novel hyperactive Sleeping Beauty transposase enables robust stable gene transfer in vertebrates

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3618316

Duplications involving a conserved regulatory element downstream of BMP2 are associated with brachydactyly type A2.

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3618316

Histone modifications at human enhancers reflect global cell-type-specific gene expression

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3618316

Highly conserved non-coding elements on either side of SOX9 associated with Pierre Robin sequence

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3618316

ChIP-seq accurately predicts tissue-specific activity of enhancers

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3618316

Regulation of a remote Shh forebrain enhancer by the Six3 homeoprotein

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3618316

Disruption of an AP-2alpha binding site in an IRF6 enhancer is associated with cleft lip

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3618316

Ancora: a web resource for exploring highly conserved noncoding elements and their association with developmental regulatory genes

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3618316

VISTA Enhancer Browser--a database of tissue-specific human enhancers

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3618316

In vivo enhancer analysis of human conserved non-coding sequences

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3618316

Long-range downstream enhancers are essential for Pax6 expression

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3618316

Zebrafish transgenic Enhancer TRAP line database (ZETRAP)

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3618316

Efficient transposition of the piggyBac (PB) transposon in mammalian cells and mice

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3618316

Large-scale enhancer detection in the zebrafish genome

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3618316

Long-range control of gene expression: emerging mechanisms and disruption in disease

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3618316

Enhancer trapping in zebrafish using the Sleeping Beauty transposon

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3618316

Mouse limb deformity mutations disrupt a global control region within the large regulatory landscape required for Gremlin expression

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3618316

GenePaint.org: an atlas of gene expression patterns in the mouse embryo

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3618316

Characterization of Sleeping Beauty transposition and its application to genetic screening in mice

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3618316

Scanning Human Gene Deserts for Long-Range Enhancers

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3618316

A long-range Shh enhancer regulates expression in the developing limb and fin and is associated with preaxial polydactyly

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3618316

A global control region defines a chromosomal regulatory landscape containing the HoxD cluster

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3618316

Disruption of a long-range cis-acting regulator for Shh causes preaxial polydactyly

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3618316

BLAT—The BLAST-Like Alignment Tool

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3618316

Ten years of enhancer detection: lessons from the fly.

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3618316

Molecular reconstruction of Sleeping Beauty, a Tc1-like transposon from fish, and its transposition in human cells

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3618316

Double-strand breaks at the target locus stimulate gene targeting in embryonic stem cells

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3618316

A 5' element of the chicken beta-globin domain serves as an insulator in human erythroid cells and protects against position effect in Drosophila

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3618316

Transgenes as probes for active chromosomal domains in mouse development

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3618316

Mouse embryonic stem cells and reporter constructs to detect developmentally regulated genes.

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3618316

A functional screen for sonic hedgehog regulatory elements across a 1 Mb interval identifies long-range ventral forebrain enhancers.

7 July 2018

1 reference

https://api.crossref.org/works/10.1186%2F1471-2164-14-215

Functional analysis of chicken Sox2 enhancers highlights an array of diverse regulatory elements that are conserved in mammals.

21 January 2018

1 reference

https://api.crossref.org/works/10.1186%2F1471-2164-14-215

The common colorectal cancer predisposition SNP rs6983267 at chromosome 8q24 confers potential to enhanced Wnt signaling.

21 January 2018

1 reference

https://api.crossref.org/works/10.1186%2F1471-2164-14-215

Gene expression nervous system atlas (GENSAT).

21 January 2018

1 reference

https://api.crossref.org/works/10.1186%2F1471-2164-14-215

Large-scale screen for genes controlling mammalian embryogenesis, using high-throughput gene expression analysis in mouse embryos.

21 January 2018

1 reference

https://api.crossref.org/works/10.1186%2F1471-2164-14-215

A microduplication of the long range SHH limb regulator (ZRS) is associated with triphalangeal thumb-polysyndactyly syndrome.

21 January 2018

1 reference

https://api.crossref.org/works/10.1186%2F1471-2164-14-215

Triphalangeal thumb-polysyndactyly syndrome and syndactyly type IV are caused by genomic duplications involving the long range, limb-specific SHH enhancer.

21 January 2018

1 reference

https://api.crossref.org/works/10.1186%2F1471-2164-14-215

Distal limb deficiencies, micrognathia syndrome, and syndromic forms of split hand foot malformation (SHFM) are caused by chromosome 10q genomic rearrangements.

21 January 2018

1 reference

https://api.crossref.org/works/10.1186%2F1471-2164-14-215

Duplications of noncoding elements 5' of SOX9 are associated with brachydactyly-anonychia.

21 January 2018

1 reference

https://api.crossref.org/works/10.1186%2F1471-2164-14-215

Toward simpler and faster genome-wide mutagenesis in mice.

21 January 2018

1 reference

https://api.crossref.org/works/10.1186%2F1471-2164-14-215

Inversion-induced disruption of the Hoxd cluster leads to the partition of regulatory landscapes.

21 January 2018

1 reference

https://api.crossref.org/works/10.1186%2F1471-2164-14-215

Genomic regulatory blocks encompass multiple neighboring genes and maintain conserved synteny in vertebrates

21 January 2018

1 reference

https://api.crossref.org/works/10.1186%2F1471-2164-14-215

Engineering chromosomes in mice through targeted meiotic recombination (TAMERE)

21 January 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/23547943

12 December 2020

inferred from PubMed ID database lookup

Region-specific saturation germline mutagenesis in mice using the Sleeping Beauty transposon system

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/23547943

12 December 2020

inferred from PubMed ID database lookup

Identifiers

DOI

10.1186/1471-2164-14-215

1 reference

Fatcat

https://api.fatcat.wiki/v0/release/unrlwpvr4rfwzozm2mt3hfmc2a

30 July 2022

Dimensions Publication ID

1046155425

0 references

Fatcat ID

release_unrlwpvr4rfwzozm2mt3hfmc2a

1 reference

Fatcat

https://api.fatcat.wiki/v0/release/unrlwpvr4rfwzozm2mt3hfmc2a

30 July 2022

https://api.fatcat.wiki/v0/release/unrlwpvr4rfwzozm2mt3hfmc2a

1 reference

30 July 2022

https://api.fatcat.wiki/v0/release/unrlwpvr4rfwzozm2mt3hfmc2a

1 reference

30 July 2022