Fluorescence detection of single-nucleotide polymorphisms with a single, self-complementary, triple-stem DNA probe. (Q34645059)

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:19431180%20AND%20SRC:MED&resulttype=core&format=json

27 January 2020

title

Fluorescence detection of single-nucleotide polymorphisms with a single, self-complementary, triple-stem DNA probe (English)

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single-nucleotide polymorphism

27 January 2020

main subject

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6

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27 January 2020

author name string

Yi Xiao

1

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27 January 2020

Kory J I Plakos

2

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27 January 2020

Xinhui Lou

3

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27 January 2020

Ryan J White

4

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27 January 2020

Jiangrong Qian

5

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27 January 2020

H Tom Soh

7

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27 January 2020

language of work or name

English

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publication date

1 January 2009

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Angewandte Chemie International Edition

27 January 2020

published in

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27 January 2020

volume

48

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27 January 2020

issue

24

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27 January 2020

page(s)

4354-4358

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Low-noise stemless PNA beacons for sensitive DNA and RNA detection.

27 January 2020

cites work

1 reference

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7 July 2018

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Inorganic-organic hybrid luminescent binary probe for DNA detection based on spin-forbidden resonance energy transfer

7 July 2018

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Detection of rare mutant K-ras DNA in a single-tube reaction using peptide nucleic acid as both PCR clamp and sensor probe

7 July 2018

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Sensitivity and specificity of metal surface-immobilized "molecular beacon" biosensors

7 July 2018

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SNP discovery in associating genetic variation with human disease phenotypes

7 July 2018

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Forced intercalation probes (FIT Probes): thiazole orange as a fluorescent base in peptide nucleic acids for homogeneous single-nucleotide-polymorphism detection

7 July 2018

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Single-nucleotide-specific PNA-peptide ligation on synthetic and PCR DNA templates

7 July 2018

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Hybridization kinetics and thermodynamics of molecular beacons

7 July 2018

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Structure-function relationships of shared-stem and conventional molecular beacons

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3053031

Tripartite molecular beacons

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3053031

HyBeacon probes: a new tool for DNA sequence detection and allele discrimination

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3053031

Methods for genotyping single nucleotide polymorphisms

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3053031

Effect of secondary structure on the thermodynamics and kinetics of PNA hybridization to DNA hairpins.

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3053031

Single-mismatch detection using gold-quenched fluorescent oligonucleotides

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3053031

Parallel genotyping of human SNPs using generic high-density oligonucleotide tag arrays

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3053031

Screening unlabeled DNA targets with randomly ordered fiber-optic gene arrays

7 July 2018

1 reference

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Thermodynamic basis of the enhanced specificity of structured DNA probes

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3053031

Genotyping HIV-1 and HCV strains by a combinatorial DNA melting assay (COMA)

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3053031

Molecular beacons: probes that fluoresce upon hybridization

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3053031

DNA variation and the future of human genetics

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3053031

Detection of all single-base mismatches in solution by chemiluminescence

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3053031

Screening for mutations by enzyme mismatch cleavage with T4 endonuclease VII.

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3053031

Base-base mismatches. Thermodynamics of double helix formation for dCA3XA3G + dCT3YT3G (X, Y = A,C,G,T).

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3053031

Dissociation kinetics of 19 base paired oligonucleotide-DNA duplexes containing different single mismatched base pairs

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3053031

Calculating thermodynamic data for transitions of any molecularity from equilibrium melting curves

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3053031

A Ligase-Mediated Gene Detection Technique

7 July 2018

1 reference

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Split DNA enzyme for visual single nucleotide polymorphism typing

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3053031

FIT probes: peptide nucleic acid probes with a fluorescent base surrogate enable real-time DNA quantification and single nucleotide polymorphism discovery

26 October 2018

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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3053031

Triplex molecular beacons as modular probes for DNA detection.

26 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3053031

Simple SNP typing assay using a base-discriminating fluorescent probe

26 October 2018

1 reference

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Binary malachite green aptamer for fluorescent detection of nucleic acids

26 October 2018

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A genome-wide scalable SNP genotyping assay using microarray technology

26 October 2018

1 reference

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Pyrene-labeled base-discriminating fluorescent DNA probes for homogeneous SNP typing

26 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3053031

Thiazole orange as fluorescent universal base in peptide nucleic acids

26 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3053031

Imaging of RNA in bacteria with self-ligating quenched probes

26 October 2018

1 reference

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Enthalpy-entropy compensation in DNA melting thermodynamics

26 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3053031

A reliable general purpose method for extracting genomic DNA from Dictyostelium cells

26 October 2018

1 reference

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A binary DNA probe for highly specific nucleic Acid recognition

9 December 2018

1 reference

12 December 2020

Nonenzymatic autoligation in direct three-color detection of RNA and DNA point mutations

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12 December 2020

What controls the melting properties of DNA-linked gold nanoparticle assemblies?

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12 December 2020

Target discrimination by surface-immobilized molecular beacons designed to detect Francisella tularensis

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A highly discriminating quencher-free molecular beacon for probing DNA

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Towards fully automated genome-wide polymorphism screening

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Spectral genotyping of human alleles

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12 December 2020

Identifiers

DOI

10.1002/ANIE.200900369

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:19431180%20AND%20SRC:MED&resulttype=core&format=json

27 January 2020

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:19431180%20AND%20SRC:MED&resulttype=core&format=json

27 January 2020

PubMed publication ID

19431180

1 reference