Recombination and migration of Cryphonectria hypovirus 1 as inferred from gene genealogies and the coalescent. (Q34644280)

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:15126384%20AND%20SRC:MED&resulttype=core&format=json

28 December 2019

title

Recombination and migration of Cryphonectria hypovirus 1 as inferred from gene genealogies and the coalescent (English)

1 reference

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Cryphonectria hypovirus 1

28 December 2019

main subject

object named as

Cryphonectria hypovirus 1

1 reference

3

1 reference

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28 December 2019

author name string

Ignazio Carbone

series ordinal

1

1 reference

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28 December 2019

Yir-Chung Liu

series ordinal

2

1 reference

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28 December 2019

Michael G Milgroom

series ordinal

4

1 reference

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28 December 2019

language of work or name

English

0 references

publication date

1 April 2004

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28 December 2019

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28 December 2019

volume

166

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28 December 2019

issue

4

1 reference

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28 December 2019

page(s)

1611-1629

1 reference

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Bounds on the minimum number of recombination events in a sample history.

28 December 2019

cites work

1 reference

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The structure of haplotype blocks in the human genome

7 July 2018

1 reference

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Estimating recombination rates from population genetic data

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1470819

Gene genealogies in a metapopulation

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1470819

Genetic control of horizontal virus transmission in the chestnut blight fungus, Cryphonectria parasitica.

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1470819

Distinguishing migration from isolation: a Markov chain Monte Carlo approach

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1470819

A microbial population-species interface: nested cladistic and coalescent inference with multilocus data

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1470819

Maximum likelihood estimation of a migration matrix and effective population sizes in n subpopulations by using a coalescent approach

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1470819

Estimation of effective population size and migration rate from one- and two-locus identity measures

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1470819

Variation in tolerance and virulence in the chestnut blight fungus-hypovirus interaction

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1470819

Inference from gene trees in a subdivided population

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1470819

Frequent homologous recombination events between molecules of one RNA component in a multipartite RNA virus

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1470819

Analysis of population structure of the chestnut blight fungus based on vegetative incompatibility genotypes.

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1470819

Maximum-likelihood estimation of migration rates and effective population numbers in two populations using a coalescent approach

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1470819

DnaSP version 3: an integrated program for molecular population genetics and molecular evolution analysis

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1470819

Genetics of vegetative incompatibility in cryphonectria parasitica

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1470819

Nested clade analyses of phylogeographic data: testing hypotheses about gene flow and population history.

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1470819

The genealogy of samples in models with selection

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1470819

A coalescent estimator of the population recombination rate

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1470819

Ancestral inference from samples of DNA sequences with recombination.

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1470819

The evolution and maintenance of virulence in microparasites

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1470819

New statistical tests of neutrality for DNA samples from a population.

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1470819

Statistical tests of neutrality of mutations

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1470819

CLUSTAL W: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1470819

The invasion, persistence and spread of infectious diseases within animal and plant communities

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1470819

Statistical method for testing the neutral mutation hypothesis by DNA polymorphism

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1470819

Reconstructing evolution of sequences subject to recombination using parsimony

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1470819

Evidence for common ancestry of a chestnut blight hypovirulence-associated double-stranded RNA and a group of positive-strand RNA plant viruses

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1470819

A North American hypovirulent isolate of the chestnut blight fungus with European isolate-related dsRNA

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1470819

Biological control of chestnut blight: an example of virus-mediated attenuation of fungal pathogenesis

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1470819

Estimation of levels of gene flow from DNA sequence data

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1470819

On the number of segregating sites in genetical models without recombination

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1470819

Adaptive significance of vegetative incompatibility in Neurospora crassa

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1470819

Biological control of chestnut blight

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1470819

Evidence for interspecies transmission of viruses in natural populations of filamentous fungi in the genus Cryphonectria

26 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1470819

Temporal change in genetic structure and effective population size in steelhead trout (Oncorhynchus mykiss).

26 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1470819

High-resolution haplotype structure in the human genome

26 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1470819

Phylogenetic reconstruction of intrapatient evolution of human immunodeficiency virus type 1: predominance of drift and purifying selection

26 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1470819

Mechanisms of population differentiation in marbled murrelets: historical versus contemporary processes.

26 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1470819

The partition matrix: exploring variable phylogenetic signals along nucleotide sequence alignments.

26 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1470819

Membrane-associated replication of an unencapsidated double-strand RNA of the fungus, Cryphonectria parasitica

26 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1470819

Chestnut Blight: Biological Control by Transmissible Hypovirulence in Endothia parasitica

26 October 2018

1 reference

12 December 2020

Programmed cell death correlates with virus transmission in a filamentous fungus

1 reference

12 December 2020

Haplotype diversity and the block structure of linkage disequilibrium

1 reference

12 December 2020

Multilocus nested haplotype networks extended with DNA fingerprints show common origin and fine-scale, ongoing genetic divergence in a wild microbial metapopulation

1 reference

12 December 2020

Vegetative Incompatibility and Cytoplasmic Infection in Fungi

1 reference

12 December 2020

Reconstructing recent divergence: evaluating nonequilibrium population structure in New Zealand chinook salmon

1 reference

12 December 2020

10.1534/GENETICS.166.4.1611

Identifiers

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https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:15126384%20AND%20SRC:MED&resulttype=core&format=json

28 December 2019

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:15126384%20AND%20SRC:MED&resulttype=core&format=json

28 December 2019

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:15126384%20AND%20SRC:MED&resulttype=core&format=json