RFECS: a random-forest based algorithm for enhancer identification from chromatin state (Q34633894)

3 August 2017

RFECS: a random-forest based algorithm for enhancer identification from chromatin state (English)

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3 August 2017

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8

Manolis Kellis

1 reference

3 August 2017

John Stamatoyannopoulos

6

object named as

John Stamatoyannopoulos

1 reference

3 August 2017

Nisha Rajagopal

1

1 reference

3 August 2017

Wei Xie

2

1 reference

3 August 2017

Yan Li

3

1 reference

3 August 2017

Uli Wagner

4

1 reference

3 August 2017

Wei Wang

5

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3 August 2017

Jason Ernst

7

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3 August 2017

Bing Ren

9

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3 August 2017

14 March 2013

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PLOS Computational Biology

3 August 2017

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3 August 2017

9

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3 August 2017

3

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3 August 2017

e1002968

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Creative Commons Attribution 4.0 International

3 August 2017

start time

14 March 2013

1 reference

April 2022 Public Data File from Crossref

copyright status

copyrighted

0 references

describes a project that uses

edgeR

object named as

edgeR

1 reference

CZ Software Mentions: A large dataset of software mentions in the biomedical literature

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Chromatin state signatures associated with tissue-specific gene expression and enhancer activity in the embryonic limb

7 July 2018

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A machine learning approach for identifying novel cell type-specific transcriptional regulators of myogenesis

7 July 2018

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Genome-wide enhancer prediction from epigenetic signatures using genetic algorithm-optimized support vector machines.

7 July 2018

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Predicting tissue specific cis-regulatory modules in the human genome using pairs of co-occurring motifs

7 July 2018

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ReLA, a local alignment search tool for the identification of distal and proximal gene regulatory regions and their conserved transcription factor binding sites.

7 July 2018

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Tissue-specific analysis of chromatin state identifies temporal signatures of enhancer activity during embryonic development.

7 July 2018

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Large-scale discovery of enhancers from human heart tissue

7 July 2018

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Enhancers in embryonic stem cells are enriched for transposable elements and genetic variations associated with cancers

7 July 2018

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A user's guide to the encyclopedia of DNA elements (ENCODE)

7 July 2018

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Mapping and analysis of chromatin state dynamics in nine human cell types

7 July 2018

1 reference

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Co-occupancy by multiple cardiac transcription factors identifies transcriptional enhancers active in heart.

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3597546

PU.1 and C/EBP(alpha) synergistically program distinct response to NF-kappaB activation through establishing monocyte specific enhancers

7 July 2018

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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3597546

High-resolution genome-wide in vivo footprinting of diverse transcription factors in human cells

7 July 2018

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The NIH Roadmap Epigenomics Mapping Consortium

7 July 2018

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Transcriptional enhancers in animal development and evolution

7 July 2018

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Discovery and characterization of chromatin states for systematic annotation of the human genome

7 July 2018

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Discover regulatory DNA elements using chromatin signatures and artificial neural network.

7 July 2018

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Distinct epigenomic landscapes of pluripotent and lineage-committed human cells.

7 July 2018

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Widespread transcription at neuronal activity-regulated enhancers

7 July 2018

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Comparative genomics of gene regulation-conservation and divergence of cis-regulatory information.

7 July 2018

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edgeR: a Bioconductor package for differential expression analysis of digital gene expression data

7 July 2018

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Finding distal regulatory elements in the human genome

7 July 2018

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Genome-wide mapping of HATs and HDACs reveals distinct functions in active and inactive genes

7 July 2018

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An integrated approach to identifying cis-regulatory modules in the human genome.

7 July 2018

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Histone modifications at human enhancers reflect global cell-type-specific gene expression

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3597546

ChIP-seq accurately predicts tissue-specific activity of enhancers

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3597546

Prediction of regulatory elements in mammalian genomes using chromatin signatures.

7 July 2018

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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3597546

ChromaSig: a probabilistic approach to finding common chromatin signatures in the human genome

7 July 2018

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Model-based analysis of ChIP-Seq (MACS)

7 July 2018

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Combinatorial patterns of histone acetylations and methylations in the human genome

7 July 2018

1 reference

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High-resolution mapping and characterization of open chromatin across the genome

7 July 2018

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7 July 2018

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Ultraconservation identifies a small subset of extremely constrained developmental enhancers

7 July 2018

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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3597546

Identification and analysis of functional elements in 1% of the human genome by the ENCODE pilot project

7 July 2018

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The landscape of histone modifications across 1% of the human genome in five human cell lines

7 July 2018

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High-resolution profiling of histone methylations in the human genome

7 July 2018

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Distinct and predictive chromatin signatures of transcriptional promoters and enhancers in the human genome

7 July 2018

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Java Treeview--extensible visualization of microarray data

7 July 2018

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The human genome browser at UCSC

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3597546

Transcription factor-specific requirements for coactivators and their acetyltransferase functions

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3597546

Versatile molecular glue. Transcriptional control

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3597546

Genome-scale mapping of DNase I sensitivity in vivo using tiling DNA microarrays.

7 July 2018

1 reference

Crossref

https://api.crossref.org/works/10.1371%2FJOURNAL.PCBI.1002968

21 January 2018

Random Forests

1 reference

Astrophysics Data System

15 December 2022

https://ui.adsabs.harvard.edu/abs/2001MachL..45....5B/citations

Identifiers

DOI

10.1371/JOURNAL.PCBI.1002968

1 reference

journals/ploscb/RajagopalXLWWSEKR13

3 August 2017

0 references

1 reference

DBLP Dataset 2021-01-02

28 January 2021

1 reference

3 August 2017

1 reference