XLPM: efficient algorithm for the analysis of protein-protein contacts using chemical cross-linking mass spectrometry. (Q34606991)

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22 February 2020

title

XLPM: efficient algorithm for the analysis of protein-protein contacts using chemical cross-linking mass spectrometry (English)

1 reference

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22 February 2020

3

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22 February 2020

Boris Zybailov

6

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22 February 2020

author name string

Mihir Jaiswal

1

1 reference

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22 February 2020

Nathaniel Crabtree

2

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22 February 2020

Roger Hall

4

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22 February 2020

Kevin D Raney

5

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22 February 2020

publication date

21 October 2014

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22 February 2020

1 reference

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22 February 2020

volume

15 Suppl 11

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page(s)

S16

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describes a project that uses

22 February 2020

PyMOL

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/efetch.fcgi?db=pmc&rettype=xml&id=PMC4251045

exact match

https://scigraph.springernature.com/pub.10.1186/1471-2105-15-s11-s16

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cites work

Large Scale Chemical Cross-linking Mass Spectrometry Perspectives.

1 reference

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The BioGRID interaction database: 2013 update

7 July 2018

1 reference

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Physical and functional interaction between yeast Pif1 helicase and Rim1 single-stranded DNA binding protein

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4251045

Differential network biology

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4251045

StavroX--a software for analyzing crosslinked products in protein interaction studies

7 July 2018

1 reference

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Diazirine based photoaffinity labeling

7 July 2018

1 reference

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Protein-protein interaction network evaluation for identifying potential drug targets.

7 July 2018

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Database search algorithm for identification of intact cross-links in proteins and peptides using tandem mass spectrometry.

7 July 2018

1 reference

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xComb: a cross-linked peptide database approach to protein-protein interaction analysis

7 July 2018

1 reference

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Yeast two-hybrid, a powerful tool for systems biology

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4251045

Target-decoy search strategy for increased confidence in large-scale protein identifications by mass spectrometry

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4251045

CLPM: a cross-linked peptide mapping algorithm for mass spectrometric analysis

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4251045

Statistical characterization of ion trap tandem mass spectra from doubly charged tryptic peptides

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4251045

Functional organization of the yeast proteome by systematic analysis of protein complexes

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4251045

Chemical cross-linking with thiol-cleavable reagents combined with differential mass spectrometric peptide mapping--a novel approach to assess intermolecular protein contacts

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4251045

Shotgun cross-linking analysis for studying quaternary and tertiary protein structures

7 July 2018

1 reference

Crossref

https://api.crossref.org/works/10.1186%2F1471-2105-15-S11-S16

Auto-induction medium for the production of [U-15N]- and [U-13C, U-15N]-labeled proteins for NMR screening and structure determination

21 January 2018

1 reference

Crossref

https://api.crossref.org/works/10.1186%2F1471-2105-15-S11-S16

Peptide sequence tags for fast database search in mass-spectrometry.

21 January 2018

1 reference

Crossref

https://api.crossref.org/works/10.1186%2F1471-2105-15-S11-S16

10.1186/1471-2105-15-S11-S16

21 January 2018

Identifiers

DOI

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25350700%20AND%20SRC:MED&resulttype=core&format=json

journals/bmcbi/JaiswalCBHRZ14

22 February 2020

DBLP publication ID

1 reference

DBLP Dataset 2021-01-02

Dimensions Publication ID

28 January 2021

0 references

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25350700%20AND%20SRC:MED&resulttype=core&format=json

22 February 2020

1 reference