Identifying viral integration sites using SeqMap 2.0. (Q34588579)

3 August 2017

Identifying viral integration sites using SeqMap 2.0. (English)

1 reference

3 August 2017

Troy B Hawkins

1

1 reference

3 August 2017

Jessica Dantzer

2

1 reference

3 August 2017

Brandon Peters

3

1 reference

3 August 2017

Mary Dinauer

4

1 reference

3 August 2017

Keithanne Mockaitis

5

1 reference

3 August 2017

Sean Mooney

6

1 reference

3 August 2017

Kenneth Cornetta

7

1 reference

3 August 2017

language of work or name

English

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publication date

17 January 2011

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3 August 2017

3

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based on heuristic

inferred from page(s)

published in

Bioinformatics

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3 August 2017

27

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3 August 2017

5

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3 August 2017

720-722

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Artificial and natural duplicates in pyrosequencing reads of metagenomic data

3 August 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3042184

Retroviral vector integration in post-transplant hematopoiesis in mice conditioned with either submyeloablative or ablative irradiation

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3042184

Insertional oncogenesis in 4 patients after retrovirus-mediated gene therapy of SCID-X1

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3042184

Automated analysis of viral integration sites in gene therapy research using the SeqMap web resource

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3042184

MUSCLE: multiple sequence alignment with high accuracy and high throughput

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3042184

RTCGD: retroviral tagged cancer gene database

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3042184

LMO2-associated clonal T cell proliferation in two patients after gene therapy for SCID-X1

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3042184

BLAT—The BLAST-Like Alignment Tool

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3042184

Evi-2, a common integration site involved in murine myeloid leukemogenesis

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3042184

Retroviral integration in murine myeloid tumors to identify Evi-1, a novel locus encoding a zinc-finger protein.

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3042184

Long-distance activation of the Myc protooncogene by provirus insertion in Mlvi-1 or Mlvi-4 in rat T-cell lymphomas

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3042184

Ligation-mediated PCR of restriction fragments from large DNA molecules

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3042184

QuickMap: a public tool for large-scale gene therapy vector insertion site mapping and analysis

7 July 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTQ722

An introduction to the Lagan alignment toolkit.

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTQ722

Comprehensive genomic access to vector integration in clinical gene therapy

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTQ722

Globin Lentiviral Vector Insertions Can Perturb the Expression of Endogenous Genes in β-thalassemic Hematopoietic Cells

21 January 2018

2 references

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTQ722

21 January 2018

https://pubmed.ncbi.nlm.nih.gov/21245052

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Clonal dominance of hematopoietic stem cells triggered by retroviral gene marking.

1 reference

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTQ722

Efficient characterization of retro-, lenti-, and foamyvector-transduced cell populations by high-accuracy insertion site sequencing.

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTQ722

High-resolution insertion-site analysis by linear amplification-mediated PCR (LAM-PCR).

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTQ722

New bioinformatic strategies to rapidly characterize retroviral integration sites of gene therapy vectors.

21 January 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3042184

10.1093/BIOINFORMATICS/BTQ722

27 October 2018

Identifiers

DOI

1 reference

journals/bioinformatics/HawkinsDPDMMC11

3 August 2017

1 reference

DBLP Dataset 2021-01-02

28 January 2021

1 reference

3 August 2017

1 reference