Massive-scale gene co-expression network construction and robustness testing using random matrix theory (Q34586391)

3 August 2017

Massive-scale gene co-expression network construction and robustness testing using random matrix theory (English)

1 reference

3 August 2017

2

1 reference

3 August 2017

Scott M Gibson

1

1 reference

3 August 2017

Sven Isaacson

3

1 reference

3 August 2017

Feng Luo

4

1 reference

3 August 2017

Frank A Feltus

5

1 reference

3 August 2017

Melissa C Smith

6

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3 August 2017

language of work or name

English

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publication date

7 February 2013

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3 August 2017

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3 August 2017

8

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3 August 2017

e55871

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3 August 2017

2

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Creative Commons Attribution 4.0 International

3 August 2017

start time

7 February 2013

1 reference

April 2022 Public Data File from Crossref

copyright status

copyrighted

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cites work

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7 July 2018

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Assembly of an interactive correlation network for the Arabidopsis genome using a novel heuristic clustering algorithm

7 July 2018

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7 July 2018

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Threshold selection in gene co-expression networks using spectral graph theory techniques

7 July 2018

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Coexpression network based on natural variation in human gene expression reveals gene interactions and functions

7 July 2018

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Large-scale analysis of Arabidopsis transcription reveals a basal co-regulation network

7 July 2018

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RiceArrayNet: a database for correlating gene expression from transcriptome profiling, and its application to the analysis of coexpressed genes in rice

7 July 2018

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Identification of cis-regulatory elements in gene co-expression networks using A-GLAM.

7 July 2018

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Function annotation of an SBP-box gene in Arabidopsis based on analysis of co-expression networks and promoters

7 July 2018

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Combining partial correlation and an information theory approach to the reversed engineering of gene co-expression networks

7 July 2018

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Articulation of three core metabolic processes in Arabidopsis: fatty acid biosynthesis, leucine catabolism and starch metabolism

7 July 2018

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The UCSC Genome Browser Database: 2008 update

7 July 2018

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7 July 2018

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Constructing gene co-expression networks and predicting functions of unknown genes by random matrix theory

7 July 2018

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Systematic construction of gene coexpression networks with applications to human T helper cell differentiation process

7 July 2018

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Approaches for extracting practical information from gene co-expression networks in plant biology

7 July 2018

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The TIGR Rice Genome Annotation Resource: improvements and new features

7 July 2018

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7 July 2018

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Systematic survey reveals general applicability of "guilt-by-association" within gene coexpression networks

7 July 2018

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From single genes to co-expression networks: extracting knowledge from barley functional genomics.

7 July 2018

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Identification of genes required for cellulose synthesis by regression analysis of public microarray data sets

7 July 2018

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Bayesian model averaging: development of an improved multi-class, gene selection and classification tool for microarray data

7 July 2018

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Bioconductor: open software development for computational biology and bioinformatics

7 July 2018

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Coexpression analysis of human genes across many microarray data sets

7 July 2018

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Network biology: understanding the cell's functional organization

7 July 2018

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A gene-coexpression network for global discovery of conserved genetic modules

7 July 2018

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7 July 2018

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Random matrix approach to cross correlations in financial data

7 July 2018

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7 July 2018

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The InterPro database, an integrated documentation resource for protein families, domains and functional sites

7 July 2018

1 reference

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Discovering functional relationships between RNA expression and chemotherapeutic susceptibility using relevance networks

7 July 2018

1 reference

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Gene ontology: tool for the unification of biology

7 July 2018

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7 July 2018

1 reference

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Adaptive quality-based clustering of gene expression profiles.

7 July 2018

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PONE.0055871

Weighted gene co-expression network analysis identifies biomarkers in glycerol kinase deficient mice.

21 January 2018

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PONE.0055871

Towards patterns tree of gene coexpression in eukaryotic species.

21 January 2018

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https://api.crossref.org/works/10.1371%2FJOURNAL.PONE.0055871

Simultaneous identification of differential gene expression and connectivity in inflammation, adipogenesis and cancer.

21 January 2018

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PONE.0055871

Gene co-expression network topology provides a framework for molecular characterization of cellular state

21 January 2018

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PONE.0055871

Deterministic scale-free networks

21 January 2018

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PONE.0055871

The association of multiple interacting genes with specific phenotypes in rice using gene coexpression networks

21 January 2018

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PONE.0055871

Transcriptional coordination of the metabolic network in Arabidopsis.

21 January 2018

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PONE.0055871

Link communities reveal multiscale complexity in networks

21 January 2018

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PONE.0055871

A Coefficient of Agreement for Nominal Scales

21 January 2018

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PONE.0055871

Gene coexpression network alignment and conservation of gene modules between two grass species: maize and rice

21 January 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/23409071

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Conservation and coevolution in the scale-free human gene coexpression network

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/23409071

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Identifiers

DOI

10.1371/JOURNAL.PONE.0055871

1 reference

3 August 2017

0 references

1 reference

3 August 2017

1 reference