Observing micro-evolutionary processes of viral populations at multiple scales (Q34574693)

3 August 2017

9 references

23 March 2019

30 June 2019

20 June 2019

14 September 2019

3 November 2019

27 July 2020

30 October 2020

22 August 2022

22 October 2022

Observing micro-evolutionary processes of viral populations at multiple scales (English)

1 reference

RNA virus infectious disease

3 August 2017

1 reference

14 September 2019

1 reference

3 November 2019

1 reference

PubMed

host microbial interaction

1 July 2020

1 reference

27 July 2020

1 reference

30 October 2020

Gaël Thébaud

5

0 references

Daniel T. Haydon

object named as

Daniel T Haydon

10

0 references

Donald P King

object named as

Donald P King

9

0 references

Richard J Orton

1

object named as

Richard J Orton

1 reference

3 August 2017

Caroline F Wright

2

1 reference

3 August 2017

Marco J Morelli

3

1 reference

3 August 2017

Nicholas Juleff

4

1 reference

3 August 2017

Nick J Knowles

6

1 reference

3 August 2017

Begoña Valdazo-González

7

1 reference

3 August 2017

David J Paton

8

1 reference

3 August 2017

language of work or name

English

0 references

publication date

4 February 2013

1 reference

Philosophical Transactions of the Royal Society B

3 August 2017

19 March 2013

10 references

23 March 2019

30 June 2019

20 June 2019

14 September 2019

3 November 2019

1 July 2020

27 July 2020

30 October 2020

22 August 2022

22 October 2022

11 references

3 August 2017

23 March 2019

30 June 2019

20 June 2019

14 September 2019

3 November 2019

1 July 2020

27 July 2020

30 October 2020

22 August 2022

22 October 2022

368

1 reference

3 August 2017

20120203

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3 August 2017

1614

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Creative Commons Attribution 3.0 Unported

3 August 2017

10 references

23 March 2019

30 June 2019

20 June 2019

14 September 2019

3 November 2019

1 July 2020

27 July 2020

30 October 2020

22 August 2022

Evolution of foot-and-mouth disease virus intra-sample sequence diversity during serial transmission in bovine hosts

22 October 2022

0 references

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3678327

Accumulation of nucleotide substitutions occurring during experimental transmission of foot-and-mouth disease virus.

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3678327

Viral mutation and substitution: units and levels

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3678327

Contribution of intra- and interhost dynamics to norovirus evolution

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3678327

Serotype identification and VP1 coding sequence analysis of foot-and-mouth disease viruses from outbreaks in eastern and northern Uganda in 2008/9.

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3678327

Role of donor genital tract HIV-1 diversity in the transmission bottleneck

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3678327

A simple method for the parallel deep sequencing of full influenza A genomes.

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3678327

The mode and tempo of hepatitis C virus evolution within and among hosts

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3678327

Comparative sequence analysis of representative foot-and-mouth disease virus genomes from Southeast Asia.

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3678327

Beyond the consensus: dissecting within-host viral population diversity of foot-and-mouth disease virus by using next-generation genome sequencing

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3678327

Transmission of single HIV-1 genomes and dynamics of early immune escape revealed by ultra-deep sequencing

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3678327

Mutational fitness effects in RNA and single-stranded DNA viruses: common patterns revealed by site-directed mutagenesis studies

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3678327

Hepatitis C virus transmission bottlenecks analyzed by deep sequencing.

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3678327

Sequence data and evidence of possible airborne spread in the 2001 foot-and-mouth disease epidemic in the UK.

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3678327

Evolutionary analysis of the dynamics of viral infectious disease

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3678327

Development and validation of a duplex quantitative real-time RT-PCR assay for simultaneous detection and quantitation of foot-and-mouth disease viral positive-stranded RNAs and negative-stranded RNAs

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3678327

Ultra-deep pyrosequencing of hepatitis B virus quasispecies from nucleoside and nucleotide reverse-transcriptase inhibitor (NRTI)-treated patients and NRTI-naive patients.

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3678327

Massively parallel pyrosequencing highlights minority variants in the HIV-1 env quasispecies deriving from lymphomonocyte sub-populations

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3678327

Analysis of Foot-and-mouth disease virus nucleotide sequence variation within naturally infected epithelium

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3678327

Viral population estimation using pyrosequencing

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3678327

Transmission pathways of foot-and-mouth disease virus in the United Kingdom in 2007

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3678327

Rates of evolutionary change in viruses: patterns and determinants

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3678327

BEAST: Bayesian evolutionary analysis by sampling trees

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3678327

Characterization of mutation spectra with ultra-deep pyrosequencing: application to HIV-1 drug resistance

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3678327

DNA bar coding and pyrosequencing to identify rare HIV drug resistance mutations

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3678327

HIV evolutionary dynamics within and among hosts

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3678327

Molecular epidemiology of the foot-and-mouth disease virus outbreak in the United Kingdom in 2001

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3678327

Laser-capture microdissection: refining estimates of the quantity and distribution of latent herpes simplex virus 1 and varicella-zoster virus DNA in human trigeminal Ganglia at the single-cell level

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3678327

Molecular epidemiology of foot-and-mouth disease virus.

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3678327

Is the quasispecies concept relevant to RNA viruses?

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3678327

Foot-and-mouth disease type O viruses exhibit genetically and geographically distinct evolutionary lineages (topotypes).

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3678327

TCS: a computer program to estimate gene genealogies

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3678327

Mutation rates among RNA viruses

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3678327

Spontaneous mutation rate of measles virus: direct estimation based on mutations conferring monoclonal antibody resistance.

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3678327

Rates of spontaneous mutation among RNA viruses

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3678327

Rapid evolution of RNA genomes

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3678327

Selforganization of matter and the evolution of biological macromolecules

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3678327

The hypercycle. A principle of natural self-organization. Part A: Emergence of the hypercycle

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3678327

Integrating genetic and epidemiological data to determine transmission pathways of foot-and-mouth disease virus.

7 July 2018

1 reference

https://api.crossref.org/works/10.1098%2FRSTB.2012.0203

Foot-and-mouth disease in Bulgaria

21 January 2018

1 reference

https://api.crossref.org/works/10.1098%2FRSTB.2012.0203

Low-abundance drug-resistant viral variants in chronically HIV-infected, antiretroviral treatment-naive patients significantly impact treatment outcomes

21 January 2018

1 reference

https://api.crossref.org/works/10.1098%2FRSTB.2012.0203

Modelling the initial spread of foot-and-mouth disease through animal movements.

21 January 2018

1 reference

https://api.crossref.org/works/10.1098%2FRSTB.2012.0203

Distinct viral populations differentiate and evolve independently in a single perennial host plant

21 January 2018

1 reference

https://api.crossref.org/works/10.1098%2FRSTB.2012.0203

21 January 2018

1 reference

https://api.crossref.org/works/10.1098%2FRSTB.2012.0203

New insights into the evolutionary rate of HIV-1 at the within-host and epidemiological levels

21 January 2018

1 reference

https://api.crossref.org/works/10.1098%2FRSTB.2012.0203

The relationship between mutation frequency and replication strategy in positive-sense single-stranded RNA viruses

21 January 2018

1 reference

https://api.crossref.org/works/10.1098%2FRSTB.2012.0203

Optimal replication of poliovirus within cells

21 January 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/23382425

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Identifiers

DOI

10.1098/RSTB.2012.0203

1 reference

3 August 2017

1 reference

3 August 2017

1 reference