Comparative genome structure, secondary metabolite, and effector coding capacity across Cochliobolus pathogens (Q34565854)

3 August 2017

Comparative genome structure, secondary metabolite, and effector coding capacity across Cochliobolus pathogens (English)

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3 August 2017

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28

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3 August 2017

23

Erika Lindquist

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Jane Grimwood

9

Jane Grimwood

1 reference

3 August 2017

Bradford J Condon

1

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Kerrie Barry

Kerrie Barry

24

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Scott E. Baker

Scott E Baker

26

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Brian Steffenson

Brian J Steffenson

16

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Alex Copeland

22

Alex Copeland

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3 August 2017

25

Jeremy Schmutz

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3 August 2017

17

Asaf Salamov

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3 August 2017

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Kurt LaButti

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3 August 2017

8

Wendy Schackwitz

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3 August 2017

5

Robin A Ohm

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3 August 2017

6

Robert Otillar

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14

Braham Dhillon

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3 August 2017

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Lynda M Ciuffetti

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3 August 2017

29

Shaobin Zhong

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3 August 2017

Yueqiang Leng

2

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3 August 2017

Dongliang Wu

3

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3 August 2017

Kathryn E Bushley

4

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3 August 2017

Joel Martin

7

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3 August 2017

NurAinizzati MohdZainudin

10

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3 August 2017

Chunsheng Xue

11

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3 August 2017

Rui Wang

12

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3 August 2017

Viola A Manning

13

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3 August 2017

Zheng Jin Tu

15

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3 August 2017

Hui Sun

18

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3 August 2017

Steve Lowry

19

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James Han

21

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B Gillian Turgeon

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24 January 2013

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e1003233

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Creative Commons CC0 License

3 August 2017

start time

24 January 2013

1 reference

April 2022 Public Data File from Crossref

copyright status

copyrighted, dedicated to the public domain by copyright holder

0 references

describes a project that uses

MUMmer

MUMMER

MUMmer

1 reference

CZ Software Mentions: A large dataset of software mentions in the biomedical literature

MUMmer

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Rediscovery by Whole Genome Sequencing: Classical Mutations and Genome Polymorphisms in Neurospora crassa.

7 July 2018

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ChLae1 and ChVel1 regulate T-toxin production, virulence, oxidative stress response, and development of the maize pathogen Cochliobolus heterostrophus

7 July 2018

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7 July 2018

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Biosynthesis and function of gliotoxin in Aspergillus fumigatus

7 July 2018

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A highly conserved NB-LRR encoding gene cluster effective against Setosphaeria turcica in sorghum

7 July 2018

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Finished genome of the fungal wheat pathogen Mycosphaerella graminicola reveals dispensome structure, chromosome plasticity, and stealth pathogenesis

7 July 2018

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Identification of cryptic products of the gliotoxin gene cluster using NMR-based comparative metabolomics and a model for gliotoxin biosynthesis

7 July 2018

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A novel mode of chromosomal evolution peculiar to filamentous Ascomycete fungi.

7 July 2018

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HMMER web server: interactive sequence similarity searching

7 July 2018

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PERMANENT GENETIC RESOURCES: Development of microsatellite markers for the guava rust fungus, Puccinia psidii

7 July 2018

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Effector diversification within compartments of the Leptosphaeria maculans genome affected by Repeat-Induced Point mutations

7 July 2018

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Horizontal gene and chromosome transfer in plant pathogenic fungi affecting host range.

7 July 2018

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High-quality draft assemblies of mammalian genomes from massively parallel sequence data

7 July 2018

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Studying plant-pathogen interactions in the genomics era: beyond molecular Koch's postulates to systems biology

7 July 2018

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New developments in pathogenicity and virulence of necrotrophs

7 July 2018

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Host-selective toxins, Ptr ToxA and Ptr ToxB, as necrotrophic effectors in the Pyrenophora tritici-repentis-wheat interaction

7 July 2018

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A unique wheat disease resistance-like gene governs effector-triggered susceptibility to necrotrophic pathogens

7 July 2018

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progressiveMauve: multiple genome alignment with gene gain, loss and rearrangement

7 July 2018

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Bipolaris sorokiniana, a cereal pathogen of global concern: cytological and molecular approaches towards better controldouble dagger.

7 July 2018

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Resistance loci affecting distinct stages of fungal pathogenesis: use of introgression lines for QTL mapping and characterization in the maize--Setosphaeria turcica pathosystem

7 July 2018

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Phylogenomics reveals subfamilies of fungal nonribosomal peptide synthetases and their evolutionary relationships.

7 July 2018

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Horizontal chromosome transfer, a mechanism for the evolution and differentiation of a plant-pathogenic fungus

7 July 2018

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Melanin is an essential component for the integrity of the cell wall of Aspergillus fumigatus conidia

7 July 2018

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Module evolution and substrate specificity of fungal nonribosomal peptide synthetases involved in siderophore biosynthesis

7 July 2018

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A rapid bootstrap algorithm for the RAxML Web servers

7 July 2018

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Host-specific toxins: effectors of necrotrophic pathogenicity

7 July 2018

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Velvet: algorithms for de novo short read assembly using de Bruijn graphs

7 July 2018

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A guardian of grasses: specific origin and conservation of a unique disease-resistance gene in the grass lineage

7 July 2018

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Evidence for horizontal transfer of a secondary metabolite gene cluster between fungi

7 July 2018

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The Fusarium graminearum genome reveals a link between localized polymorphism and pathogen specialization

7 July 2018

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Plant disease susceptibility conferred by a "resistance" gene

7 July 2018

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Telomeres in the rice blast fungus Magnaporthe oryzae: the world of the end as we know it.

7 July 2018

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Intracellular siderophores are essential for ascomycete sexual development in heterothallic Cochliobolus heterostrophus and homothallic Gibberella zeae

7 July 2018

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Advantages of combined transmembrane topology and signal peptide prediction--the Phobius web server

7 July 2018

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Genetic and genomic dissection of the Cochliobolus heterostrophus Tox1 locus controlling biosynthesis of the polyketide virulence factor T-toxin.

7 July 2018

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RAxML-VI-HPC: maximum likelihood-based phylogenetic analyses with thousands of taxa and mixed models

7 July 2018

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7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3554632

Two enzymes involved in biosynthesis of the host-selective phytotoxin HC-toxin

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3554632

Chemoenzymatic and template-directed synthesis of bioactive macrocyclic peptides

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3554632

Gene prediction in eukaryotes with a generalized hidden Markov model that uses hints from external sources

7 July 2018

1 reference

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Repbase Update, a database of eukaryotic repetitive elements

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3554632

Genome sequencing in microfabricated high-density picolitre reactors

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3554632

De novo identification of repeat families in large genomes

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3554632

Functional analysis of all nonribosomal peptide synthetases in Cochliobolus heterostrophus reveals a factor, NPS6, involved in virulence and resistance to oxidative stress

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3554632

ProtTest: selection of best-fit models of protein evolution

7 July 2018

1 reference

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Biosynthesis of nonribosomal peptides1.

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3554632

7 July 2018

GeneWise and Genomewise

1 reference

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Versatile and open software for comparing large genomes

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3554632

Phylogenomic analysis of type I polyketide synthase genes in pathogenic and saprobic ascomycetes.

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3554632

Learning from nature's drug factories: nonribosomal synthesis of macrocyclic peptides

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3554632

Biosynthesis of fungal melanins and their importance for human pathogenic fungi

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3554632

The Bioperl toolkit: Perl modules for the life sciences

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3554632

Ways of assembling complex natural products on modular nonribosomal peptide synthetases

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3554632

Host-selective toxins and avirulence determinants: what's in a name?

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3554632

BLAT—The BLAST-Like Alignment Tool

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3554632

A cyclic peptide synthetase gene required for pathogenicity of the fungus Cochliobolus carbonum on maize

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3554632

Using GeneWise in the Drosophila annotation experiment

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3554632

Ab initio gene finding in Drosophila genomic DNA

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3554632

A developmentally regulated gene cluster involved in conidial pigment biosynthesis in Aspergillus fumigatus.

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3554632

The translocation-associated tox1 locus of Cochliobolus heterostrophus is two genetic elements on two different chromosomes

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3554632

Plant-pathogen microevolution: molecular basis for the origin of a fungal disease in maize

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3554632

A single gene encodes a selective toxin causal to the development of tan spot of wheat.

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3554632

A polyketide synthase is required for fungal virulence and production of the polyketide T-toxin

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3554632

Host-selective toxins: agents of compatibility

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3554632

The multiple carrier model of nonribosomal peptide biosynthesis at modular multienzymatic templates

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3554632

MAPMAKER: an interactive computer package for constructing primary genetic linkage maps of experimental and natural populations

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3554632

Reductase activity encoded by the HM1 disease resistance gene in maize

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3554632

A restriction fragment length polymorphism map and electrophoretic karyotype of the fungal maize pathogen Cochliobolus heterostrophus.

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3554632

Identification and characterization of victorin sensitivity in Arabidopsis thaliana

7 July 2018

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PGEN.1003233

Genetics of Virulence in Cochliobolus sativus and Resistance in Barley

21 January 2018

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PGEN.1003233

NPS6, encoding a nonribosomal peptide synthetase involved in siderophore-mediated iron metabolism, is a conserved virulence determinant of plant pathogenic ascomycetes.

21 January 2018

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PGEN.1003233

Chromosomal organization of TOX2, a complex locus controlling host-selective toxin biosynthesis in Cochliobolus carbonum.

21 January 2018

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PGEN.1003233

Mapping of avirulence genes in the rice blast fungus, Magnaporthe grisea, with RFLP and RAPD markers.

21 January 2018

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PGEN.1003233

Functional characterization and manipulation of the apicidin biosynthetic pathway in Fusarium semitectum

21 January 2018

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PGEN.1003233

Sfp-type 4'-phosphopantetheinyl transferase is required for lysine synthesis, tolerance to oxidative stress and virulence in the plant pathogenic fungus Cochliobolus sativus.

21 January 2018

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PGEN.1003233

The sirodesmin biosynthetic gene cluster of the plant pathogenic fungus Leptosphaeria maculans

21 January 2018

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PGEN.1003233

Characteristic features of the nucleotide sequences of yeast mitochondrial ribosomal protein genes as analyzed by computer program GeneMark.

21 January 2018

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PGEN.1003233

RNA-mediated gene silencing in the cereal fungal pathogen Cochliobolus sativus.

21 January 2018

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PGEN.1003233

Genetics of seedling and adult plant resistance to net blotch (Pyrenophora teres f. teres) and spot blotch (Cochliobolus sativus) in barley

21 January 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3554632

Two Polyketide Synthase-Encoding Genes Are Required for Biosynthesis of the Polyketide Virulence Factor, T-toxin, byCochliobolus heterostrophus

27 October 2018

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PGEN.1003233

Six new genes required for production of T-toxin, a polyketide determinant of high virulence of Cochliobolus heterostrophus to maize

21 January 2018

1 reference

12 December 2020

An extended physical map of the TOX2 locus of Cochliobolus carbonum required for biosynthesis of HC-toxin

1 reference

12 December 2020

A molecular genetic map and electrophoretic karyotype of the plant pathogenic fungus Cochliobolus sativus

1 reference

12 December 2020

Histone Hyperacetylation in Maize in Response to Treatment with HC-Toxin or Infection by the Filamentous Fungus Cochliobolus carbonum

1 reference

12 December 2020

The Bengal famine, 1943 and the brown spot of rice--an inquiry into their relations

1 reference

12 December 2020

Characterization of natural and induced variation in the LOV1 gene, a CC-NB-LRR gene conferring victorin sensitivity and disease susceptibility in Arabidopsis

1 reference

12 December 2020

Single mating type-specific genes and their 3' UTRs control mating and fertility in Cochliobolus heterostrophus

1 reference

12 December 2020

Differential Phytotoxicity of Metabolic By-Products of Helminthosporium victoriae

1 reference

12 December 2020

Thioredoxin h5 is required for victorin sensitivity mediated by a CC-NBS-LRR gene in Arabidopsis

1 reference

12 December 2020

10.1371/JOURNAL.PGEN.1003233

Identifiers

DOI

1 reference

3 August 2017

1 reference

3 August 2017

1 reference