Investigating the predictability of essential genes across distantly related organisms using an integrative approach (Q34559562)

3 August 2017

Investigating the predictability of essential genes across distantly related organisms using an integrative approach (English)

1 reference

3 August 2017

Jingyuan Deng

1

1 reference

3 August 2017

Lei Deng

2

1 reference

3 August 2017

Shengchang Su

3

1 reference

3 August 2017

Minlu Zhang

4

1 reference

3 August 2017

Xiaodong Lin

5

1 reference

3 August 2017

Lan Wei

6

1 reference

3 August 2017

Ali A Minai

7

1 reference

3 August 2017

Daniel J Hassett

8

1 reference

3 August 2017

Long J Lu

9

1 reference

3 August 2017

language of work or name

English

0 references

publication date

24 September 2010

1 reference

3 August 2017

Nucleic Acids Research

1 reference

3 August 2017

39

1 reference

3 August 2017

3

1 reference

3 August 2017

795-807

1 reference

Creative Commons Attribution-NonCommercial 2.5 Generic

3 August 2017

start time

7 November 2016

1 reference

April 2022 Public Data File from Crossref

copyright status

copyrighted

0 references

cites work

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7 July 2018

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7 July 2018

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7 July 2018

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Experimental and computational assessment of conditionally essential genes in Escherichia coli

7 July 2018

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7 July 2018

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7 July 2018

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An ordered, nonredundant library of Pseudomonas aeruginosa strain PA14 transposon insertion mutants

7 July 2018

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7 July 2018

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Assessing the limits of genomic data integration for predicting protein networks

7 July 2018

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Identification of essential genes in Streptococcus pneumoniae by allelic replacement mutagenesis.

7 July 2018

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Evolutionary origins of genomic repertoires in bacteria

7 July 2018

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Unique features revealed by the genome sequence of Acinetobacter sp. ADP1, a versatile and naturally transformation competent bacterium

7 July 2018

1 reference

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Understanding protein dispensability through machine-learning analysis of high-throughput data

7 July 2018

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Genomic analysis of essentiality within protein networks

7 July 2018

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Phylogeny of gamma-proteobacteria: resolution of one branch of the universal tree?

7 July 2018

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The 'effective number of codons' revisited

7 July 2018

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Predicting subcellular localization of proteins using machine-learned classifiers

7 July 2018

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A genomics-based approach to biodefence preparedness

7 July 2018

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Comprehensive transposon mutant library of Pseudomonas aeruginosa

7 July 2018

1 reference

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Experimental Determination and System Level Analysis of Essential Genes in Escherichia coli MG1655

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3035443

Essential Bacillus subtilis genes

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3035443

Functional profiling of the Saccharomyces cerevisiae genome

7 July 2018

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Comprehensive essential gene identification as a platform for novel anti-infective drug discovery.

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3035443

Essential genes are more evolutionarily conserved than are nonessential genes in bacteria

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3035443

Relating whole-genome expression data with protein-protein interactions

7 July 2018

1 reference

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Identification of novel essential Escherichia coli genes conserved among pathogenic bacteria.

7 July 2018

1 reference

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Lethality and centrality in protein networks

7 July 2018

1 reference

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A simple model based on mutation and selection explains trends in codon and amino-acid usage and GC composition within and across genomes

7 July 2018

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7 July 2018

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Genomic expression programs in the response of yeast cells to environmental changes

7 July 2018

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The COG database: a tool for genome-scale analysis of protein functions and evolution

7 July 2018

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Functional characterization of the S. cerevisiae genome by gene deletion and parallel analysis

7 July 2018

1 reference

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A hidden Markov model for predicting transmembrane helices in protein sequences

7 July 2018

1 reference

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Concordance analysis of microbial genomes

7 July 2018

1 reference

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A simple method for displaying the hydropathic character of a protein

7 July 2018

1 reference

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The codon Adaptation Index--a measure of directional synonymous codon usage bias, and its potential applications

7 July 2018

1 reference

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The 'effective number of codons' used in a gene

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3035443

Genomics. Synthetic genome brings new life to bacterium.

7 July 2018

1 reference

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A genome-based approach for the identification of essential bacterial genes.

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FNAR%2FGKQ784

A global approach to identify novel broad-spectrum antibacterial targets among proteins of unknown function

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FNAR%2FGKQ784

Predicting essential genes in fungal genomes

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FNAR%2FGKQ784

Cell size and nucleoid organization of engineered Escherichia coli cells with a reduced genome.

21 January 2018

1 reference

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AUC: a misleading measure of the performance of predictive distribution models

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FNAR%2FGKQ784

Detecting putative orthologs.

21 January 2018

1 reference

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In silico prediction of yeast deletion phenotypes.

21 January 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3035443

Predicting subcellular localization of proteins using machine-learned classifiers

27 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3035443

Essential Genes Are More Evolutionarily Conserved Than Are Nonessential Genes in Bacteria

27 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3035443

FtsK is an essential cell division protein that is localized to the septum and induced as part of the SOS response

9 December 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/20870748

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Gene essentiality analysis based on DEG, a database of essential genes

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/20870748

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Are essential genes really essential?

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/20870748

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Identifiers

DOI

10.1093/NAR/GKQ784

1 reference

3 August 2017

1 reference

3 August 2017

1 reference