Applications of the molecular dynamics flexible fitting method (Q34544183)

2 August 2017

Applications of the molecular dynamics flexible fitting method (English)

1 reference

2 August 2017

5

Elizabeth Villa

0 references

Klaus Schulten

series ordinal

6

object named as

Klaus Schulten

1 reference

2 August 2017

3

James Gumbart

1 reference

2 August 2017

2

Eduard Schreiner

1 reference

2 August 2017

Leonardo G Trabuco

1

1 reference

PubMed ID

20932910

2 August 2017

Jen Hsin

series ordinal

4

1 reference

2 August 2017

12 October 2010

1 reference

Journal of Structural Biology

2 August 2017

1 reference

2 August 2017

173

1 reference

2 August 2017

3

1 reference

2 August 2017

420-427

1 reference

The role of L1 stalk-tRNA interaction in the ribosome elongation cycle

2 August 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3032011

The actin-myosin interface.

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3032011

Recognition of the regulatory nascent chain TnaC by the ribosome

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3032011

3.3 A cryo-EM structure of a nonenveloped virus reveals a priming mechanism for cell entry

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3032011

Self-assembly of photosynthetic membranes

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3032011

Structural model and excitonic properties of the dimeric RC-LH1-PufX complex from Rhodobacter sphaeroides

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3032011

Membrane curvature induced by aggregates of LH2s and monomeric LH1s

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3032011

Structural insight into nascent polypeptide chain-mediated translational stalling.

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3032011

Structure of Monomeric Yeast and Mammalian Sec61 Complexes Interacting with the Translating Ribosome

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3032011

Membrane-bending mechanism of amphiphysin N-BAR domains

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3032011

Regulation of the Protein-Conducting Channel by a Bound Ribosome

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3032011

A glycophorin A-like framework for the dimerization of photosynthetic core complexes

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3032011

What recent ribosome structures have revealed about the mechanism of translation

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3032011

The Crystal Structure of the Ribosome Bound to EF-Tu and Aminoacyl-tRNA

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3032011

Protein-induced membrane curvature investigated through molecular dynamics flexible fitting

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3032011

Simulations of membrane tubulation by lattices of amphiphysin N-BAR domains

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3032011

Molecular dynamics flexible fitting: a practical guide to combine cryo-electron microscopy and X-ray crystallography

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3032011

Ribosome-induced changes in elongation factor Tu conformation control GTP hydrolysis

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3032011

The roles of pore ring and plug in the SecY protein-conducting channel

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3032011

Insights into Translational Termination from the Structure of RF2 Bound to the Ribosome

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3032011

Structure of a complex of the ATPase SecA and the protein-translocation channel

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3032011

Single Copies of Sec61 and TRAP Associate with a Nontranslating Mammalian Ribosome

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3032011

Intrinsic curvature properties of photosynthetic proteins in chromatophores

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3032011

Four-scale description of membrane sculpting by BAR domains

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3032011

Flexible fitting of atomic structures into electron microscopy maps using molecular dynamics

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3032011

Three-dimensional reconstruction of a membrane-bending complex: the RC-LH1-PufX core dimer of Rhodobacter sphaeroides

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3032011

Ribosome binding of a single copy of the SecY complex: implications for protein translocation

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3032011

Protein translocation across the eukaryotic endoplasmic reticulum and bacterial plasma membranes

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3032011

RNA-based regulation of genes of tryptophan synthesis and degradation, in bacteria

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3032011

Molecular dynamics studies of the archaeal translocon

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3032011

How proteins produce cellular membrane curvature

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3032011

Membrane curvature and mechanisms of dynamic cell membrane remodelling

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3032011

Scalable molecular dynamics with NAMD

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3032011

Molecular architecture of photosynthetic membranes in Rhodobacter sphaeroides: the role of PufX.

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3032011

The long-range supraorganization of the bacterial photosynthetic unit: A key role for PufX.

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3032011

VMD: visual molecular dynamics

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3032011

Crystal structure of active elongation factor Tu reveals major domain rearrangements

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3032011

The crystal structure of elongation factor EF-Tu from Thermus aquaticus in the GTP conformation

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3032011

A protein-conducting channel in the endoplasmic reticulum.

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3032011

Formation of salt bridges mediates internal dimerization of myosin VI medial tail domain

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3032011

Constitutive, translation-independent opening of the protein-conducting channel in the endoplasmic reticulum

27 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3032011

Essential role of histidine 84 in elongation factor Tu for the chemical step of GTP hydrolysis on the ribosome

27 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3032011

Instruction of translating ribosome by nascent peptide

27 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3032011

Translocon pores in the endoplasmic reticulum are permeable to a neutral, polar molecule

27 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3032011

Joint effort bends membrane

27 October 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/20932910

12 December 2020

inferred from PubMed ID database lookup

Determining the conductance of the SecY protein translocation channel for small molecules

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/20932910

12 December 2020

inferred from PubMed ID database lookup

Hydrolysis of GTP by elongation factor Tu can be induced by monovalent cations in the absence of other effectors

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/20932910

12 December 2020

inferred from PubMed ID database lookup

Identifiers

DOI

10.1016/J.JSB.2010.09.024

1 reference

Fatcat

https://api.fatcat.wiki/v0/release/5hdrnjlxtvai7njrh55pzru4fq

30 July 2022

release_5hdrnjlxtvai7njrh55pzru4fq

Fatcat ID

1 reference

Fatcat

https://api.fatcat.wiki/v0/release/5hdrnjlxtvai7njrh55pzru4fq

30 July 2022

https://api.fatcat.wiki/v0/release/5hdrnjlxtvai7njrh55pzru4fq

1 reference

30 July 2022

https://api.fatcat.wiki/v0/release/5hdrnjlxtvai7njrh55pzru4fq

1 reference

30 July 2022