Accelerating literature curation with text-mining tools: a case study of using PubTator to curate genes in PubMed abstracts (Q34480402)

2 August 2017

Accelerating literature curation with text-mining tools: a case study of using PubTator to curate genes in PubMed abstracts (English)

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2 August 2017

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Tanya Z Berardini

4

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Eva Huala

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Eva Huala

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5

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Chih-Hsuan Wei

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Chih-Hsuan Wei

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2 August 2017

6

Hung-Yu Kao

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2 August 2017

7

Zhiyong Lu

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2 August 2017

2

Bethany R Harris

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2 August 2017

Donghui Li

3

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2 August 2017

17 November 2012

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2 August 2017

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2 August 2017

2012

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2 August 2017

bas041

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An overview of the BioCreative 2012 Workshop Track III: interactive text mining task

2 August 2017

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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3500520

Biocuration workflows and text mining: overview of the BioCreative 2012 Workshop Track II

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3500520

Prioritizing PubMed articles for the Comparative Toxicogenomic Database utilizing semantic information

6 July 2018

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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3500520

SR4GN: a species recognition software tool for gene normalization

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3500520

Text mining for the biocuration workflow

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3500520

Cross-species gene normalization by species inference

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3500520

BioCreative III interactive task: an overview

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3500520

The Protein-Protein Interaction tasks of BioCreative III: classification/ranking of articles and linking bio-ontology concepts to full text

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3500520

The gene normalization task in BioCreative III

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3500520

Overview of the BioCreative III Workshop

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3500520

The Arabidopsis Information Resource (TAIR): improved gene annotation and new tools

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3500520

The ERI-6/7 helicase acts at the first stage of an siRNA amplification pathway that targets recent gene duplications

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3500520

WormBase 2012: more genomes, more data, new website

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3500520

Is ABP1 an auxin receptor yet?

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3500520

GeneTUKit: a software for document-level gene normalization

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3500520

Semi-automatic semantic annotation of PubMed queries: a study on quality, efficiency, satisfaction

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3500520

Textpresso: an ontology-based information retrieval and extraction system for biological literature

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3500520

PreBIND and Textomy--mining the biomedical literature for protein-protein interactions using a support vector machine

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3500520

Assisted curation: does text mining really help?

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3500520

Integrating natural language processing with FlyBase curation.

27 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3500520

27 October 2018

Identifiers

DOI

10.1093/DATABASE/BAS041

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2 August 2017

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2 August 2017

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PubMed ID

23160414