Capture Hi-C identifies the chromatin interactome of colorectal cancer risk loci (Q34463600)

2 August 2017

Capture Hi-C identifies the chromatin interactome of colorectal cancer risk loci (English)

1 reference

2 August 2017

1 reference

1 reference

Radhika Kandaswamy

4

0 references

Marc Henrion

Marc Henrion

3

0 references

Martin Enge

Martin Enge

13

0 references

Peter Fraser

Peter Fraser

16

0 references

Richard Houlston

Richard S Houlston

18

0 references

Yinyin Yuan

Yinyin Yuan

14

0 references

Olivia Fletcher

Olivia Fletcher

17

0 references

author name string

Roland Jäger

1

1 reference

2 August 2017

Gabriele Migliorini

2

1 reference

2 August 2017

Helen E Speedy

5

1 reference

2 August 2017

Andreas Heindl

6

1 reference

2 August 2017

Nicola Whiffin

7

1 reference

2 August 2017

Maria J Carnicer

8

1 reference

2 August 2017

Laura Broome

9

1 reference

2 August 2017

Nicola Dryden

10

1 reference

2 August 2017

Takashi Nagano

11

1 reference

2 August 2017

Stefan Schoenfelder

12

1 reference

2 August 2017

Jussi Taipale

15

1 reference

2 August 2017

language of work or name

English

0 references

publication date

19 February 2015

1 reference

2 August 2017

Nature Communications

1 reference

2 August 2017

6

1 reference

2 August 2017

6178

1 reference

Creative Commons Attribution 4.0 International

2 August 2017

start time

19 February 2015

1 reference

April 2022 Public Data File from Crossref

copyright status

copyrighted

0 references

exact match

https://scigraph.springernature.com/pub.10.1038/ncomms7178

0 references

cites work

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Human colorectal cancer-specific CCAT1-L lncRNA regulates long-range chromatin interactions at the MYC locus

6 July 2018

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Analysis of hundreds of cis-regulatory landscapes at high resolution in a single, high-throughput experiment.

6 July 2018

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Identification and characterization of functional risk variants for colorectal cancer mapping to chromosome 11q23.1.

6 July 2018

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A high-resolution map of the three-dimensional chromatin interactome in human cells

6 July 2018

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Transcription factor binding in human cells occurs in dense clusters formed around cohesin anchor sites

6 July 2018

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Deciphering the genetic architecture of low-penetrance susceptibility to colorectal cancer

6 July 2018

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CCAT2, a novel noncoding RNA mapping to 8q24, underlies metastatic progression and chromosomal instability in colon cancer

6 July 2018

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Exploring the three-dimensional organization of genomes: interpreting chromatin interaction data

6 July 2018

1 reference

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Differential expression of colon cancer associated transcript1 (CCAT1) along the colonic adenoma-carcinoma sequence.

6 July 2018

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RanGTPase: a candidate for Myc-mediated cancer progression.

6 July 2018

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An integrated map of genetic variation from 1,092 human genomes

6 July 2018

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Robust 4C-seq data analysis to screen for regulatory DNA interactions.

6 July 2018

1 reference

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The long-range interaction landscape of gene promoters

6 July 2018

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An integrated encyclopedia of DNA elements in the human genome

6 July 2018

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Iterative correction of Hi-C data reveals hallmarks of chromosome organization

6 July 2018

1 reference

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Recurrent R-spondin fusions in colon cancer

6 July 2018

1 reference

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Comprehensive molecular characterization of human colon and rectal cancer

6 July 2018

1 reference

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Integrative functional genomics identifies an enhancer looping to the SOX9 gene disrupted by the 17q24.3 prostate cancer risk locus

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4346635

Spatial partitioning of the regulatory landscape of the X-inactivation centre

6 July 2018

1 reference

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Topological domains in mammalian genomes identified by analysis of chromatin interactions

6 July 2018

1 reference

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ChromHMM: automating chromatin-state discovery and characterization

6 July 2018

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Spatial organization of the mouse genome and its role in recurrent chromosomal translocations

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4346635

Overexpression of Evi-1 oncoprotein represses TGF-β signaling in colorectal cancer

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4346635

Estimating causal effects of genetic risk variants for breast cancer using marker data from bilateral and familial cases

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4346635

TERC polymorphisms are associated both with susceptibility to colorectal cancer and with longer telomeres.

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4346635

TRPS1 targeting by miR-221/222 promotes the epithelial-to-mesenchymal transition in breast cancer

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4346635

Multiple common susceptibility variants near BMP pathway loci GREM1, BMP4, and BMP2 explain part of the missing heritability of colorectal cancer

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4346635

Colon cancer associated transcript-1: a novel RNA expressed in malignant and pre-malignant human tissues.

6 July 2018

1 reference

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A user's guide to the encyclopedia of DNA elements (ENCODE)

6 July 2018

1 reference

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Synthetic associations are unlikely to account for many common disease genome-wide association signals

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4346635

Synthetic associations created by rare variants do not explain most GWAS results

6 July 2018

1 reference

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Down-regulation of VEZT gene expression in human gastric cancer involves promoter methylation and miR-43c

6 July 2018

1 reference

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Identifying a high fraction of the human genome to be under selective constraint using GERP++.

6 July 2018

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Stampy: a statistical algorithm for sensitive and fast mapping of Illumina sequence reads

6 July 2018

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Meta-analysis of three genome-wide association studies identifies susceptibility loci for colorectal cancer at 1q41, 3q26.2, 12q13.13 and 20q13.33

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4346635

Hi-C: a method to study the three-dimensional architecture of genomes

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4346635

8q24 prostate, breast, and colon cancer risk loci show tissue-specific long-range interaction with MYC.

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4346635

Interchromosomal association and gene regulation in trans

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4346635

Transcriptome genetics using second generation sequencing in a Caucasian population

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4346635

Comprehensive mapping of long-range interactions reveals folding principles of the human genome

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4346635

FISH and SNP-A karyotyping in myelodysplastic syndromes: improving cytogenetic detection of del(5q), monosomy 7, del(7q), trisomy 8 and del(20q)

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4346635

The 8q24 cancer risk variant rs6983267 shows long-range interaction with MYC in colorectal cancer

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4346635

Meta-analysis of genome-wide association data identifies four new susceptibility loci for colorectal cancer

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4346635

SNAP: a web-based tool for identification and annotation of proxy SNPs using HapMap

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4346635

Genome-wide association scan identifies a colorectal cancer susceptibility locus on 11q23 and replicates risk loci at 8q24 and 18q21.

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4346635

Common genetic variants at the CRAC1 (HMPS) locus on chromosome 15q13.3 influence colorectal cancer risk

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4346635

Nuclear organization of active and inactive chromatin domains uncovered by chromosome conformation capture-on-chip (4C).

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4346635

New technologies, new findings, and new concepts in the study of vertebrate cis-regulatory sequences

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4346635

Evolutionarily conserved elements in vertebrate, insect, worm, and yeast genomes

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4346635

Distribution and intensity of constraint in mammalian genomic sequence

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4346635

Interchromosomal associations between alternatively expressed loci

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4346635

The International HapMap Project

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4346635

Statistical significance for genomewide studies

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4346635

Capturing chromosome conformation

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4346635

A genome-wide association study shows that common alleles of SMAD7 influence colorectal cancer risk

6 July 2018

1 reference

https://api.crossref.org/works/10.1038%2FNCOMMS7178

A genome-wide association study identifies colorectal cancer susceptibility loci on chromosomes 10p14 and 8q23.3

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNCOMMS7178

The common colorectal cancer predisposition SNP rs6983267 at chromosome 8q24 confers potential to enhanced Wnt signaling.

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNCOMMS7178

Probabilistic modeling of Hi-C contact maps eliminates systematic biases to characterize global chromosomal architecture.

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNCOMMS7178

β-Catenin regulates deiodinase levels and thyroid hormone signaling in colon cancer cells

21 January 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/25695508

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Identifiers

DOI

10.1038/NCOMMS7178

1 reference

Dimensions Publication ID

2 August 2017

0 references

0 references

1 reference

2 August 2017

1 reference