Proteomic workflow for analysis of archival formalin-fixed and paraffin-embedded clinical samples to a depth of 10 000 proteins (Q34454877)

2 August 2017

Proteomic workflow for analysis of archival formalin-fixed and paraffin-embedded clinical samples to a depth of 10 000 proteins (English)

1 reference

2 August 2017

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1

Jacek R Wiśniewski

1 reference

2 August 2017

Kamila Duś

2

1 reference

PubMed ID

23090905

2 August 2017

Matthias Mann

series ordinal

3

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2 August 2017

6 March 2013

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Proteomics - Clinical Applications

2 August 2017

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2 August 2017

7

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2 August 2017

3-4

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2 August 2017

225-233

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Proteomic changes resulting from gene copy number variations in cancer cells

2 August 2017

1 reference

https://api.crossref.org/works/10.1002%2FPRCA.201200046

Proteomic portrait of human breast cancer progression identifies novel prognostic markers

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPRCA.201200046

The grand challenge to decipher the cancer proteome.

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPRCA.201200046

Proteomics of colorectal cancer: overview of discovery studies and identification of commonly identified cancer-associated proteins and candidate CRC serum markers.

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPRCA.201200046

Cell surface proteomics identifies glucose transporter type 1 and prion protein as candidate biomarkers for colorectal adenoma-to-carcinoma progression.

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPRCA.201200046

High recovery FASP applied to the proteomic analysis of microdissected formalin fixed paraffin embedded cancer tissues retrieves known colon cancer markers

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPRCA.201200046

Universal sample preparation method for proteome analysis

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPRCA.201200046

Tools for phospho- and glycoproteomics of plasma membranes

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPRCA.201200046

Differential proteomic analysis of late-stage and recurrent breast cancer from formalin-fixed paraffin-embedded tissues

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPRCA.201200046

Proteome, phosphoproteome, and N-glycoproteome are quantitatively preserved in formalin-fixed paraffin-embedded tissue and analyzable by high-resolution mass spectrometry

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPRCA.201200046

Proteomic analysis of formalin-fixed prostate cancer tissue

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPRCA.201200046

Protein extraction from formalin-fixed, paraffin-embedded tissue sections: quality evaluation by mass spectrometry

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPRCA.201200046

Development of efficient protein extraction methods for shotgun proteome analysis of formalin-fixed tissues.

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPRCA.201200046

Proteome analysis of microdissected formalin-fixed and paraffin-embedded tissue specimens.

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPRCA.201200046

Initial development and validation of a novel extraction method for quantitative mining of the formalin-fixed, paraffin-embedded tissue proteome for biomarker investigations

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPRCA.201200046

Successful protein extraction from over-fixed and long-term stored formalin-fixed tissues

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPRCA.201200046

Toward deciphering proteomes of formalin-fixed paraffin-embedded (FFPE) tissues.

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPRCA.201200046

Proteomic mapping of brain plasma membrane proteins.

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPRCA.201200046

Combination of FASP and StageTip-based fractionation allows in-depth analysis of the hippocampal membrane proteome

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPRCA.201200046

Deep and highly sensitive proteome coverage by LC-MS/MS without prefractionation.

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPRCA.201200046

Mass spectrometry-based proteomics using Q Exactive, a high-performance benchtop quadrupole Orbitrap mass spectrometer.

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPRCA.201200046

Higher-energy C-trap dissociation for peptide modification analysis.

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPRCA.201200046

MaxQuant enables high peptide identification rates, individualized p.p.b.-range mass accuracies and proteome-wide protein quantification

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPRCA.201200046

Quantitative proteomics reveals subset-specific viral recognition in dendritic cells.

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPRCA.201200046

Large-scale analysis of the yeast proteome by multidimensional protein identification technology

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPRCA.201200046

A strategy for identifying gel-separated proteins in sequence databases by MS alone.

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPRCA.201200046

Microproteomic analysis of 10,000 laser captured microdissected breast tumor cells using short-range sodium dodecyl sulfate-polyacrylamide gel electrophoresis and porous layer open tubular liquid chromatography tandem mass spectrometry.

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPRCA.201200046

Stop and go extraction tips for matrix-assisted laser desorption/ionization, nanoelectrospray, and LC/MS sample pretreatment in proteomics

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPRCA.201200046

Peptide separation with immobilized pI strips is an attractive alternative to in-gel protein digestion for proteome analysis

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPRCA.201200046

The quantitative proteome of a human cell line.

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPRCA.201200046

Global quantification of mammalian gene expression control

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPRCA.201200046

Comparative proteomic profiling of membrane proteins in rat cerebellum, spinal cord, and sciatic nerve.

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPRCA.201200046

Deep proteome and transcriptome mapping of a human cancer cell line

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPRCA.201200046

A census of human transcription factors: function, expression and evolution

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPRCA.201200046

Ab initio reconstruction of cell type-specific transcriptomes in mouse reveals the conserved multi-exonic structure of lincRNAs

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPRCA.201200046

Transcript assembly and quantification by RNA-Seq reveals unannotated transcripts and isoform switching during cell differentiation

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPRCA.201200046

21 January 2018

Identifiers

DOI

10.1002/PRCA.201200046

1 reference

2 August 2017

1 reference

PubMed ID

23090905