Evolution of oligomeric state through allosteric pathways that mimic ligand binding (Q34454783)

2 August 2017

Evolution of oligomeric state through allosteric pathways that mimic ligand binding (English)

1 reference

2 August 2017

1 reference

10

1 reference

2 August 2017

Stephen H. McLaughlin

object named as

Stephen H McLaughlin

4

0 references

Nathalie Reuter

object named as

Nathalie Reuter

8

0 references

Tina Perica

1

object named as

Tina Perica

1 reference

2 August 2017

Yasushi Kondo

2

1 reference

2 August 2017

Sandhya P Tiwari

3

1 reference

2 August 2017

Katherine R Kemplen

5

1 reference

2 August 2017

Xiuwei Zhang

6

1 reference

2 August 2017

Annette Steward

7

1 reference

2 August 2017

Jane Clarke

9

1 reference

2 August 2017

language of work or name

English

0 references

publication date

1 December 2014

1 reference

2 August 2017

1 reference

2 August 2017

346

1 reference

2 August 2017

6216

1 reference

2 August 2017

1254346

1 reference

Evaluation of Protein Elastic Network Models Based on an Analysis of Collective Motions

2 August 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4337988

Dynamics and constraints of enzyme evolution

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4337988

Evolution of protein structures and interactions from the perspective of residue contact networks

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4337988

Stability-mediated epistasis constrains the evolution of an influenza protein

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4337988

What makes a protein fold amenable to functional innovation? Fold polarity and stability trade-offs

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4337988

Molecular signatures of G-protein-coupled receptors

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4337988

Evolution of oligomeric state through geometric coupling of protein interfaces

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4337988

Protein conformational diversity modulates sequence divergence

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4337988

On the origin and evolution of thermophily: reconstruction of functional precambrian enzymes from ancestors of Bacillus

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4337988

REFMAC5 for the refinement of macromolecular crystal structures

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4337988

Overview of the CCP4 suite and current developments

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4337988

Analyzing protein structure and function using ancestral gene reconstruction

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4337988

Atomic interaction networks in the core of protein domains and their native folds

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4337988

An epistatic ratchet constrains the direction of glucocorticoid receptor evolution

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4337988

Stability effects of mutations and protein evolvability

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4337988

Phasercrystallographic software

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4337988

Regulation of pyrimidine biosynthetic gene expression in bacteria: repression without repressors

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4337988

pyr RNA binding to the Bacillus caldolyticus PyrR attenuation protein - characterization and regulation by uridine and guanosine nucleotides.

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4337988

Evolutionary conservation of protein backbone flexibility.

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4337988

Assessing the accuracy of ancestral protein reconstruction methods

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4337988

MUSTANG: a multiple structural alignment algorithm.

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4337988

Contribution of electrostatic interactions, compactness and quaternary structure to protein thermostability: lessons from structural genomics of Thermotoga maritima.

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4337988

Molecular dynamics and protein function

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4337988

Structure of the nucleotide complex of PyrR, the pyr attenuation protein from Bacillus caldolyticus, suggests dual regulation by pyrimidine and purine nucleotides.

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4337988

Robotic nanolitre protein crystallisation at the MRC Laboratory of Molecular Biology.

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4337988

Coot: model-building tools for molecular graphics

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4337988

An analysis of core deformations in protein superfamilies

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4337988

MUSCLE: multiple sequence alignment with high accuracy and high throughput

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4337988

Transconformations of the SERCA1 Ca-ATPase: A Normal Mode Study

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4337988

MrBayes 3: Bayesian phylogenetic inference under mixed models

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4337988

Characterization of the interaction of Bacillus subtilis PyrR with pyr mRNA by site-directed mutagenesis of the protein

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4337988

Molecular recognition of pyr mRNA by the Bacillus subtilis attenuation regulatory protein PyrR

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4337988

Conformational change of proteins arising from normal mode calculations

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4337988

Adjustment of conformational flexibility is a key event in the thermal adaptation of proteins

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4337988

Adaptation of an enzyme to regulatory function: structure of Bacillus subtilis PyrR, a pyr RNA-binding attenuation protein and uracil phosphoribosyltransferase

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4337988

Evolutionary trees from DNA sequences: A maximum likelihood approach

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4337988

Analysis of protein loop closure. Two types of hinges produce one motion in lactate dehydrogenase

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4337988

Collective motions in proteins: A covariance analysis of atomic fluctuations in molecular dynamics and normal mode simulations

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4337988

The spandrels of San Marco and the Panglossian paradigm: a critique of the adaptationist programme

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4337988

Protein surface amino acid compositions distinctively differ between thermophilic and mesophilic bacteria

6 July 2018

1 reference

https://api.crossref.org/works/10.1126%2FSCIENCE.1254346

Measuring and comparing structural fluctuation patterns in large protein datasets.

21 January 2018

1 reference

https://api.crossref.org/works/10.1126%2FSCIENCE.1254346

Deciphering the deformation modes associated with function retention and specialization in members of the Ras superfamily.

21 January 2018

1 reference

https://api.crossref.org/works/10.1126%2FSCIENCE.1254346

The Scattering of Light and the Radial Distribution Function of High Polymer Solutions

21 January 2018

1 reference

https://api.crossref.org/works/10.1126%2FSCIENCE.1254346

Analysis of protein loop closure

21 January 2018

1 reference

https://api.crossref.org/works/10.1126%2FSCIENCE.1254346

Bio3d: an R package for the comparative analysis of protein structures.

21 January 2018

1 reference

https://api.crossref.org/works/10.1126%2FSCIENCE.1254346

Rate4Site: an algorithmic tool for the identification of functional regions in proteins by surface mapping of evolutionary determinants within their homologues.

21 January 2018

1 reference

https://api.crossref.org/works/10.1126%2FSCIENCE.1254346

MolProbity: all-atom structure validation for macromolecular crystallography

21 January 2018

1 reference

https://api.crossref.org/works/10.1126%2FSCIENCE.1254346

Conflict among individual mitochondrial proteins in resolving the phylogeny of eutherian orders

21 January 2018

1 reference

https://api.crossref.org/works/10.1126%2FSCIENCE.1254346

A general empirical model of protein evolution derived from multiple protein families using a maximum-likelihood approach

21 January 2018

1 reference

https://api.crossref.org/works/10.1126%2FSCIENCE.1254346

Plastid genome phylogeny and a model of amino acid substitution for proteins encoded by chloroplast DNA.

21 January 2018

1 reference

https://api.crossref.org/works/10.1126%2FSCIENCE.1254346

Amino acid substitution matrices from protein blocks

21 January 2018

1 reference

https://api.crossref.org/works/10.1126%2FSCIENCE.1254346

Size-Distribution Analysis of Macromolecules by Sedimentation Velocity Ultracentrifugation and Lamm Equation Modeling

21 January 2018

1 reference

https://api.crossref.org/works/10.1126%2FSCIENCE.1254346

Scaling and assessment of data quality

21 January 2018

1 reference

https://api.crossref.org/works/10.1126%2FSCIENCE.1254346

21 January 2018

1 reference

https://api.crossref.org/works/10.1126%2FSCIENCE.1254346

A simple definition of structural regions in proteins and its use in analyzing interface evolution.

21 January 2018

1 reference

https://api.crossref.org/works/10.1126%2FSCIENCE.1254346

The packing density in proteins: standard radii and volumes.

21 January 2018

1 reference

https://api.crossref.org/works/10.1126%2FSCIENCE.1254346

rtREV: an amino acid substitution matrix for inference of retrovirus and reverse transcriptase phylogeny

21 January 2018

1 reference

https://api.crossref.org/works/10.1126%2FSCIENCE.1254346

Network Analysis of Protein Structures Identifies Functional Residues

21 January 2018

1 reference

https://api.crossref.org/works/10.1126%2FSCIENCE.1254346

Harmonicity in slow protein dynamics

21 January 2018

1 reference

https://api.crossref.org/works/10.1126%2FSCIENCE.1254346

Efficient, Global-Scale Quantification of Absolute Protein Amounts by Integration of Targeted Mass Spectrometry and Two-Dimensional Gel-Based Proteomics

21 January 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/25525255

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Characteristics and properties of a caldo-active bacterium producing extracellular enzymes and two related strains

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/25525255

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Why are proteins marginally stable?

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/25525255

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Identifiers

DOI

10.1126/SCIENCE.1254346

1 reference

2 August 2017

1 reference

2 August 2017

1 reference